Basic Information
Locus ID:
gene.Cymno06g10100
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 22051048 | 22052493 | - | gene.Cymno06g10100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 43,854.64 Da | 30.34 | 91.62 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 202 | 332 | 4.2E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 39 | 107 | 3.3E-6 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 34 | 143 | 6.02E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 187 | 333 | 6.02E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 170 | 333 | 4.8E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 27 | 169 | 5.2E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 228 | 333 | 1.9E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 28 | 176 | 10.634766 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 189 | 330 | 13.320324 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 385 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_008788906.4 | fasciclin-like arabinogalactan protein 2 [Phoenix dactylifera] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9NKP2 | Fasciclin-like arabinogalactan protein 10 OS=Zostera marina OX=29655 GN=ZOSMA_93G00910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology