Basic Information
Locus ID:
gene.Cymno06g09880
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 21907318 | 21909404 | - | gene.Cymno06g09880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 34,884.09 Da | 56.14 | 88.48 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 255 | 298 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 301 | 2.34E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 212 | 302 | 3.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 257 | 297 | 7.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 257 | 298 | 12.312242 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006452654.1 | E3 ubiquitin-protein ligase At1g63170 [Citrus clementina] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | V4WGU5 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10008862mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20203, jg21633, jg24629 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12121 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009101 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090760 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18558, Sbi_jg36965 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4829 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017304 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23594, Sgl28794, Sgl28795, Sgl28802 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011636, gene:ENSEOMG00000030881 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000630, CQ.Regalona.r1.4BG0026300 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151860, pistato.v30152130 |
| Apiaceae | Apium graveolens | 2 | Ag4G02130, Ag5G02738 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708152 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2940.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G31741 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G26580.1, AT5G55970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014037m.g.v1.0, Thhalv10025652m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g17820.v2.2, Sp7g24540.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g034720.2N, BniB05g010820.2N, BniB08g014850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1515 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04390, gene.Cymno06g09880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g19980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9022 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2071 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037963 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22451 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2887, CH02.3563 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030160, gene-QOZ80_1BG0080210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0283290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054787 |
| Poaceae | Oryza coarctata | 2 | Oco01G018290, Oco02G018530 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g50750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G247600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602578 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G014330, Chr05G021830, Chr05G021840, Chr08G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G427900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG038140, gene_TRIDC3BG042920 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G254400.1, TraesCS3B02G286400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb155600_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12672, nbis-gene-26241 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10969, Zma_g8489 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.620, evm.TU.LG09.2057, evm.TU.LG09.2058 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08820 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.52, evm.TU.Scaffold_8_RagTag.1662 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19699, nbisL1-mrna-8818 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3323, nbisL1-mrna-4024 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15040, nbisL1-mrna-22350 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.24, evm.TU.utg000028l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003731, Maker00010601 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-7986, nbisL1-mrna-9366 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22575, nbisL1-mrna-23743 |
| Salicaceae | Populus euphratica | 3 | populus_peu00867, populus_peu17799, populus_peu17806 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618753, gene-LOC132636284 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499500, SOLCI001865700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005662, gene-LOC107024545 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20770_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2573 |
| Zosteraceae | Zostera marina | 2 | Zosma05g14490.v3.1, Zosma05g21980.v3.1 |