Basic Information
Locus ID:
gene.Cymno06g08120
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
PHOT2
Description:
phototropin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 20453211 | 20488213 | + | gene.Cymno06g08120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 106,933.55 Da | 47.40 | 82.31 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 156 | 245 | 5.4181E-8 | IPR000014 |
| CDD | cd05574 | STKc_phototropin_like | 610 | 918 | 0.0 | - |
| CDD | cd00130 | PAS | 426 | 526 | 2.08914E-10 | IPR000014 |
| Pfam | PF13426 | PAS domain | 434 | 526 | 3.2E-19 | IPR000014 |
| Pfam | PF00069 | Protein kinase domain | 614 | 899 | 2.7E-61 | IPR000719 |
| Pfam | PF13426 | PAS domain | 150 | 246 | 1.6E-19 | IPR000014 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 587 | 920 | 1.48E-81 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 427 | 526 | 2.37E-23 | IPR035965 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 150 | 246 | 1.54E-22 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 400 | 564 | 3.4E-53 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 143 | 296 | 1.3E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 611 | 695 | 1.2E-92 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 696 | 908 | 1.2E-92 | - |
| SMART | SM00086 | pac_2 | 488 | 530 | 1.2E-6 | IPR001610 |
| SMART | SM00086 | pac_2 | 206 | 248 | 0.0095 | IPR001610 |
| SMART | SM00220 | serkin_6 | 612 | 899 | 1.8E-89 | IPR000719 |
| SMART | SM00091 | pas_2 | 413 | 482 | 1.6 | IPR000014 |
| SMART | SM00091 | pas_2 | 131 | 200 | 1.1 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 435 | 530 | 2.6E-9 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 156 | 246 | 4.5E-8 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 129 | 202 | 11.648568 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 612 | 899 | 44.399853 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 411 | 484 | 10.972563 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 203 | 257 | 9.391324 | IPR000700 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 485 | 539 | 12.049205 | IPR000700 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 618 | 641 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 733 | 745 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 124 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58140.1 | phototropin 2. Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. | 0 |
| RefSeq | XP_042493834.1 | phototropin-2-like isoform X2 [Macadamia integrifolia] | 0 |
| Q9ST27 | Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y894 | Phototropin-2 OS=Anthurium amnicola OX=1678845 GN=PHOT2_7 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26617, jg37943 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26579, gene_5952 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009900, Ah028129 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174900, BVRB_9g216030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11175, Sbi_jg1878, Sbi_jg34642, Sbi_jg46151 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20490, Seu_jg2880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003095, GOSA_00005464 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55721, Sgl60935, Sgl73166, Sgl76710 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005298, gene:ENSEOMG00000012984 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0001910, CQ.Regalona.r1.7BG0004840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059470, pistato.v30107130 |
| Apiaceae | Apium graveolens | 4 | Ag10G00514, Ag11G04260, Ag1G00172, Ag5G00026 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001240 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702839, gene-LOC103711883, gene-LOC120104603 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1579.V1.1, AsparagusV1_08.3443.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G34116, Ftri12G17732, Ftri18G22640 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45780.1, AT5G58140.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002386m.g.v1.0, Thhalv10012609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15740.v2.2, Sp6g19820.v2.2, SpUn0096_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037570.2N, BniB06g024850.2N, BniB08g013390.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2377, Ceq09G0011 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2568, Cgl09G0012 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g05450, gene.Cymno05g16010, gene.Cymno06g08120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33280, gene.Thate07g07900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11050, nbisL1-mrna-585 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.475, evm.TU.LG09.993 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025324, Pov_00037016 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00638, Lb3G18144, Lb3G19266, Lb4G21672 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.89, AH09.474, BH04.19, BH09.519, CH04.17, CH09.569 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0323350, gene-QOZ80_4BG0352460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159250.1, HORVU.MOREX.r3.5HG0467030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003830, gene-QYE76_043366 |
| Poaceae | Oryza coarctata | 3 | Oco07G002660, Oco08G002960, Ocoptg000061lG000070 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g23890.2, LOC_Os11g01140.1, LOC_Os12g01140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G001200, gene-BS78_07G084800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303144, Pt_Chr0303196, Pt_Chr0404815, Pt_Chr0705170 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022560, Chr21G008710, Chr23G016080, Chr26G003850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G491700, Tel5E01G270700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039210, gene_TRIDC2BG042220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272400.1, TraesCS2B02G290500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042710_P003, Zm00001eb163120_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25863, nbis-gene-8070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21060, Zma_g24578 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1540, evm.TU.LG09.342, evm.TU.LG19.1382 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35500, gene.Posoc02g23820, gene.Posoc03g11970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.779, evm.TU.Scaffold_1_RagTag.1044 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30259, nbisL1-mrna-6560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13434, nbisL1-mrna-19704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16150, nbisL1-mrna-21161 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.455, evm.TU.utg000016l.887 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015254 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11071, nbisL1-mrna-4374 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15027, nbisL1-mrna-21778 |
| Salicaceae | Populus euphratica | 4 | populus_peu01127, populus_peu08384, populus_peu08385 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600827, gene-LOC132645257 |
| Solanaceae | Solanum chilense | 2 | SOLCI002567500, SOLCI003173700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003486, gene-LOC107004580 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4869_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0298, TC11G0028 |
| Zosteraceae | Zostera marina | 2 | Zosma02g21400.v3.1, Zosma04g17980.v3.1 |