Basic Information
Locus ID:
gene.Cymno06g07310
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 19704215 | 19709599 | + | gene.Cymno06g07310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 43,208.08 Da | 37.08 | 81.55 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 128 | 177 | 7.54579E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.89453E-27 | - |
| Pfam | PF00627 | UBA/TS-N domain | 134 | 172 | 2.6E-15 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 240 | 295 | 2.0E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-15 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 236 | 303 | 3.01E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 131 | 182 | 4.51E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 2.76E-20 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 127 | 177 | 3.2E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 232 | 296 | 3.6E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 2.1E-24 | - |
| SMART | SM00165 | uba_6 | 134 | 174 | 1.6E-5 | IPR015940 |
| SMART | SM00727 | CBM | 238 | 281 | 0.001 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.5E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 107 | 333 | 1.5E-66 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 132 | 175 | 13.07703 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.822374 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 315 | 331 | 1.0E-15 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 266 | 288 | 1.0E-15 | IPR004806 |
| Coils | Coil | Coil | 267 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020103402.1 | ubiquitin receptor RAD23b-like isoform X1 [Ananas comosus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A6P5GBY7 | Ubiquitin receptor RAD23 OS=Ananas comosus OX=4615 GN=LOC109720585 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology