Basic Information
Locus ID:
gene.Cymno06g05450
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 13389665 | 13397894 | + | gene.Cymno06g05450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 59,805.96 Da | 43.93 | 70.44 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 253 | 0.073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 423 | 3.0E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 76 | 449 | 4.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 365 | 419 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 64 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 304 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 141 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 361 | 84.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 9 | 472 | 1.4E-150 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 281 | 309 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 338 | 365 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 43 | 63 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 366 | 391 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 392 | 418 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 310 | 337 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 117 | 145 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 253 | 280 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 88 | 116 | 6.7E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 225 | 252 | 6.7E-113 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_010248548.1 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Nelumbo nucifera] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1XIT0 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Anthurium amnicola OX=1678845 GN=PP2AB2_4 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology