Basic Information
Locus ID:
gene.Cymno06g04770
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 4153654 | 4184803 | + | gene.Cymno06g04770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 130,072.27 Da | 43.91 | 84.86 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 16 | 73 | 7.12236E-5 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 410 | 985 | 2.4E-174 | IPR007855 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 74 | 8.9E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 9 | 81 | 8.01E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 81 | 3.5E-7 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 14 | 96 | 9.848526 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_019703492.1 | probable RNA-dependent RNA polymerase 2 [Elaeis guineensis] | 0 |
| Q7XM31 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YXU6 | RNA-dependent RNA polymerase (Fragment) OS=Anthurium amnicola OX=1678845 GN=RDR2_6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology