Basic Information
Locus ID:
gene.Cymno06g03790
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 2596987 | 2598250 | + | gene.Cymno06g03790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 37,459.13 Da | 40.61 | 97.84 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 219 | 337 | 3.6E-10 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 56 | 176 | 1.4E-7 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 198 | 341 | 3.01E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 35 | 177 | 8.24E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 203 | 340 | 3.6E-12 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 19 | 176 | 4.6E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 233 | 341 | 2.2E-10 | IPR000782 |
| SMART | SM00554 | fasc_3 | 70 | 177 | 3.6E-5 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 192 | 338 | 14.697535 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 29 | 174 | 13.940069 | IPR000782 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20520.1 | FASCICLIN-like arabinogalactan 6. fasciclin-like arabinogalactan-protein 6 (Fla6) | 0 |
| RefSeq | XP_038685863.1 | fasciclin-like arabinogalactan protein 11 [Tripterygium wilfordii] | 0 |
| Q9SIL7 | Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835JM70 | FAS1 domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf12G0012600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology