Basic Information
Locus ID:
gene.Cymno06g02130
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 1357173 | 1369420 | - | gene.Cymno06g02130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 43,482.32 Da | 62.88 | 68.27 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 200 | 384 | 6.6E-56 | IPR033389 |
| Pfam | PF15370 | Domain of unknown function (DUF4598) | 86 | 137 | 3.8E-6 | IPR027921 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 273 | 374 | 2.65E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 277 | 386 | 1.2E-39 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 283 | 375 | 22.763493 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_038974668.1 | auxin-responsive protein IAA1-like [Phoenix dactylifera] | 0 |
| Q5VRD1 | Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YZ56 | Auxin-responsive protein OS=Anthurium amnicola OX=1678845 GN=IAA16_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology