Basic Information
Locus ID:
gene.Cymno05g18930
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 24867118 | 24868407 | + | gene.Cymno05g18930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 46,707.28 Da | 88.57 | 57.58 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 208 | 249 | 1.76711E-24 | - |
| Pfam | PF13639 | Ring finger domain | 207 | 249 | 1.5E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 286 | 384 | 2.9E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 19 | 49 | 1.0E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 255 | 9.94E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 256 | 5.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 208 | 248 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 208 | 249 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 429 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_009387750.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843VY49 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_030522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology