Basic Information
Locus ID:
gene.Cymno05g18360
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Leucine-rich repeats, typical (most populated) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 24458511 | 24470701 | - | gene.Cymno05g18360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 41,990.35 Da | 35.25 | 96.76 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 23 | 89 | 2.05048E-16 | - |
| Pfam | PF13855 | Leucine rich repeat | 302 | 339 | 2.0E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 210 | 267 | 1.0E-6 | IPR001611 |
| Pfam | PF00240 | Ubiquitin family | 23 | 92 | 3.4E-16 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 91 | 4.6E-20 | IPR029071 |
| SUPERFAMILY | SSF52058 | L domain-like | 138 | 339 | 6.8E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 120 | 247 | 2.0E-21 | IPR032675 |
| Gene3D | G3DSA:3.10.20.90 | - | 16 | 94 | 7.9E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 248 | 346 | 9.9E-24 | IPR032675 |
| SMART | SM00364 | LRR_bac_2 | 254 | 273 | 610.0 | - |
| SMART | SM00364 | LRR_bac_2 | 208 | 227 | 260.0 | - |
| SMART | SM00364 | LRR_bac_2 | 277 | 296 | 350.0 | - |
| SMART | SM00364 | LRR_bac_2 | 300 | 319 | 3.0 | - |
| SMART | SM00369 | LRR_typ_2 | 300 | 323 | 0.033 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 231 | 250 | 7.6 | - |
| SMART | SM00369 | LRR_typ_2 | 208 | 230 | 5.8 | IPR003591 |
| SMART | SM00213 | ubq_7 | 21 | 91 | 1.5E-14 | IPR000626 |
| SMART | SM00369 | LRR_typ_2 | 231 | 254 | 0.0053 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 277 | 299 | 50.0 | IPR003591 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 92 | 16.820705 | IPR000626 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 233 | 254 | 7.203709 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 302 | 323 | 7.604145 | IPR001611 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30105.1 | 0 | |
| RefSeq | XP_038980246.1 | plant intracellular Ras-group-related LRR protein 8 [Phoenix dactylifera] | 0 |
| Q7XDQ7 | Plant intracellular Ras-group-related LRR protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=IRL8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9A3K9 | plant intracellular Ras-group-related LRR protein 8 OS=Phoenix dactylifera OX=42345 GN=LOC103710343 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8381 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5970 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028165 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26853, Sbi_jg33719 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003051 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73121, Sgl76668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004611, gene:ENSEOMG00000038020 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001560, CQ.Regalona.r1.9BG0004140 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30061010, pistato.v30061020, pistato.v30061040 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01834 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710343 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.579.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05397 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30105.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014010.2N, BniB06g028120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1835 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0613s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1050 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025548 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14804 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2020, BH01.2198, CH01.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0126620, gene-QOZ80_2BG0182230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0039370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011316 |
| Poaceae | Oryza coarctata | 1 | Oco19G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g31790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G216600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502480, Pt_Chr0502506 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013570, Chr15G016120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G264700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021430, gene_TRIDC1BG026100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G142500.1, TraesCS1B02G159200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046860_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48125 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16135 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1652, evm.TU.LG26.15 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.958 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30056 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15688 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.569 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4474 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20829 |
| Salicaceae | Populus euphratica | 1 | populus_peu01725 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605790, gene-LOC132605791 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021238 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2614 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0016 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13660.v3.1 |