halophFGD

Basic Information

Locus ID: gene.Cymno05g18050

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: helix loop helix domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	24265154	24265807	+	gene.Cymno05g18050

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	23,976.65 Da	79.43	63.46	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd11454	bHLH_AtIND_like	59	115	3.02488E-38	-
Pfam	PF00010	Helix-loop-helix DNA-binding domain	68	107	9.0E-8	IPR011598
SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	63	120	8.64E-14	IPR036638
Gene3D	G3DSA:4.10.280.10	-	61	125	2.0E-10	IPR036638
SMART	SM00353	finulus	64	113	1.2E-12	IPR011598
ProSiteProfiles	PS50888	Myc-type, basic helix-loop-helix (bHLH) domain profile.	58	107	15.364022	IPR011598
MobiDBLite	mobidb-lite	consensus disorder prediction	1	70	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	37	54	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	200	217	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	192	217	-	-

Gene Ontology

Molecular Function:

GO:0046983 (protein dimerization activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G01305.1	-
RefSeq	XP_016186615.1	transcription factor bHLH140 [Arachis ipaensis]
Swiss-Prot	Q7XAQ6	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1
TrEMBL	A0A0K9PRV2	BHLH domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_18G00430 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg10663, jg17154, jg18088, jg22770, jg25270, jg32192, jg6248 ... jg39646, jg40024
Aizoaceae	Mesembryanthemum crystallinum	4	gene_17913, gene_2278, gene_26078, gene_5003
Amaranthaceae	Atriplex hortensis	4	Ah003301, Ah011155, Ah015573, Ah027126
Amaranthaceae	Beta vulgaris	3	BVRB_1g015900, BVRB_6g132940, BVRB_9g211810
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11255, Sbi_jg13407, Sbi_jg39443, Sbi_jg46222 ... Sbi_jg52443, Sbi_jg54897
Amaranthaceae	Salicornia europaea	3	Seu_jg14889, Seu_jg20555, Seu_jg9402
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001444, GOSA_00005410, GOSA_00013409, GOSA_00018520
Amaranthaceae	Suaeda glauca	12	Sgl13049, Sgl13233, Sgl13236, Sgl18274, Sgl18449, Sgl18453 ... Sgl33739, Sgl39051, Sgl51676, Sgl56308, Sgl56980, Sgl61816
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000000566, gene:ENSEOMG00000000894 ... gene:ENSEOMG00000010523, gene:ENSEOMG00000017142, gene:ENSEOMG00000018094, gene:ENSEOMG00000027456, gene:ENSEOMG00000032161, gene:ENSEOMG00000035828, gene:ENSEOMG00000038611, gene:ENSEOMG00000046459, gene:ENSEOMG00000051933
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0017590, CQ.Regalona.r1.8AG0013520
Anacardiaceae	Pistacia vera	4	pistato.v30110630, pistato.v30116030, pistato.v30116050 ... pistato.v30267460
Apiaceae	Apium graveolens	8	Ag10G01871, Ag2G00351, Ag5G00284, Ag5G00881, Ag6G01418 ... Ag7G02224, Ag9G01101, AgUnG00732
Arecaceae	Cocos nucifera	8	COCNU_01G020960, COCNU_02G006770, COCNU_03G007790 ... COCNU_04G003430, COCNU_06G002090, COCNU_13G004280, scaffold000519G000010, scaffold007842G000020
Arecaceae	Phoenix dactylifera	10	gene-LOC103698102, gene-LOC103701902, gene-LOC103712543 ... gene-LOC103712974, gene-LOC103717183, gene-LOC103719401, gene-LOC103722787, gene-LOC103722897, gene-LOC113463163, gene-LOC120112050
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.270.V1.1, AsparagusV1_05.2048.V1.1 ... AsparagusV1_06.1754.V1.1, AsparagusV1_08.3407.V1.1, AsparagusV1_09.570.V1.1
Asteraceae	Flaveria trinervia	9	Ftri13G26194, Ftri17G01430, Ftri18G02243, Ftri18G06611 ... Ftri18G08264, Ftri1G07958, Ftri1G21137, Ftri4G18508, Ftri6G20194
Brassicaceae	Arabidopsis thaliana	5	AT3G21330.1, AT3G50330.1, AT4G00120.1, AT5G09750.1 ... AT5G67060.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10004846m.g.v1.0, Thhalv10011068m.g.v1.0 ... Thhalv10015330m.g.v1.0, Thhalv10022273m.g.v1.0, Thhalv10029526m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g29620.v2.2, Sp3g19390.v2.2, Sp5g11860.v2.2 ... Sp6g00190.v2.2, Sp6g33650.v2.2
Brassicaceae	Brassica nigra	14	BniB01g041920.2N, BniB02g052080.2N, BniB02g065610.2N ... BniB04g000380.2N, BniB05g027160.2N, BniB05g031560.2N, BniB05g031650.2N, BniB05g047210.2N, BniB06g014920.2N, BniB07g031890.2N, BniB07g043810.2N, BniB08g041930.2N, BniB08g059500.2N, BniB08g064240.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0909, Ceq05G1321, Ceq06G1883
Casuarinaceae	Casuarina glauca	3	Cgl02G0924, Cgl05G1325, Cgl06G1956
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g02090, gene.Cymno05g18050, gene.Cymno07g05880 ... gene.Cymno08g06860, gene.Cymno11g07720, gene.Cymno12g04600, gene.Cymno16g04550
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g07880, gene.Thate05g03920, gene.Thate06g02700 ... gene.Thate07g05030, gene.Thate09g05460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10539, nbisL1-mrna-4358, nbisL1-mrna-4570 ... nbisL1-mrna-6763, nbisL1-mrna-7091
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.5, evm.TU.LG01.977, evm.TU.LG02.2128 ... evm.TU.LG06.420
Plantaginaceae	Plantago ovata	5	Pov_00003399, Pov_00014270, Pov_00023918, Pov_00025785 ... Pov_00027608
Poaceae	Echinochloa crus-galli	16	AH02.2061, AH02.2917, AH02.3761, AH05.1579, AH08.61 ... BH02.2117, BH02.3002, BH02.3772, BH03.2246, BH05.1728, BH08.1885, CH02.2288, CH02.3527, CH04.2152, CH08.1536, CH08.2056
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_1AG0021340, gene-QOZ80_1AG0030450 ... gene-QOZ80_1AG0038730, gene-QOZ80_1BG0071150, gene-QOZ80_1BG0080530, gene-QOZ80_1BG0088750, gene-QOZ80_5AG0364970, gene-QOZ80_5BG0412850, gene-QOZ80_6AG0537430, gene-QOZ80_6BG0490660, gene-QOZ80_8AG0614820, gene-QOZ80_8AG0634030, gene-QOZ80_8BG0642200, gene-QOZ80_8BG0663090
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0080250.1.CDS1 ... HORVU.MOREX.r3.3HG0266110.1, HORVU.MOREX.r3.3HG0283820.1.CDS1, HORVU.MOREX.r3.5HG0486320.1.CDS1, HORVU.MOREX.r3.7HG0663610.1.CDS1, HORVU.MOREX.r3.7HG0684680.1.CDS1, HORVU.MOREX.r3.7HG0706460.1.CDS1
Poaceae	Lolium multiflorum	10	gene-QYE76_005659, gene-QYE76_016268, gene-QYE76_027328 ... gene-QYE76_027335, gene-QYE76_027337, gene-QYE76_031180, gene-QYE76_033285, gene-QYE76_053361, gene-QYE76_054836, gene-QYE76_055813
Poaceae	Oryza coarctata	16	Oco01G012860, Oco01G018450, Oco01G024020, Oco02G012950 ... Oco02G018730, Oco02G024790, Oco09G015550, Oco10G015420, Oco11G005000, Oco15G000370, Oco15G012890, Oco16G000490, Oco16G000500, Oco16G009590, Oco17G006450, Oco18G006670
Poaceae	Oryza sativa	8	LOC_Os01g38610.1, LOC_Os01g51140.1, LOC_Os01g61480.1 ... LOC_Os05g46370.1, LOC_Os06g10820.1, LOC_Os08g01700.1, LOC_Os08g36740.1, LOC_Os09g28210.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G203400, gene-BS78_03G157900 ... gene-BS78_03G251100, gene-BS78_03G324900, gene-BS78_07G009700, gene-BS78_07G163300, gene-BS78_09G218600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0603044
Poaceae	Sporobolus alterniflorus	24	Chr02G005630, Chr02G011620, Chr02G017380, Chr03G009230 ... Chr03G014560, Chr03G019330, Chr05G016600, Chr05G022050, Chr05G027760, Chr08G014690, Chr0G028350, Chr0G028690, Chr14G015110, Chr16G000190, Chr16G015590, Chr17G000160, Chr17G015050, Chr18G015140, Chr20G004170, Chr20G014070, Chr21G014180, Chr22G002490, Chr29G004070, Chr29G012870
Poaceae	Thinopyrum elongatum	7	Tel3E01G359000, Tel3E01G424700, Tel3E01G562300 ... Tel5E01G384000, Tel7E01G320200, Tel7E01G460900, Tel7E01G554300
Poaceae	Triticum dicoccoides	15	gene_TRIDC3AG030560, gene_TRIDC3AG037780 ... gene_TRIDC3AG050490, gene_TRIDC3BG034910, gene_TRIDC3BG042140, gene_TRIDC3BG056830, gene_TRIDC4BG003610, gene_TRIDC5AG037550, gene_TRIDC5BG039650, gene_TRIDC7AG021140, gene_TRIDC7AG034140, gene_TRIDC7AG045290, gene_TRIDC7BG011170, gene_TRIDC7BG025390, gene_TRIDC7BG037230
Poaceae	Triticum aestivum	25	TraesCS1A02G362800.1.cds1, TraesCS1B02G380000.1.cds1 ... TraesCS1D02G367700.1.cds1, TraesCS3A02G207300.2, TraesCS3A02G252200.1.cds1, TraesCS3A02G350600.1.cds1, TraesCS3B02G233700.2, TraesCS3B02G281600.1.cds1, TraesCS3B02G383000.1.cds1, TraesCS3D02G208500.2, TraesCS3D02G252700.1.cds1, TraesCS3D02G344600.1.cds1, TraesCS5A02G237500.1.cds1, TraesCS5B02G235200.1.cds1, TraesCS5D02G244000.1.cds1, TraesCS6A02G142000.1.cds1, TraesCS7A02G169700.1.cds1, TraesCS7A02G262600.1.cds1, TraesCS7A02G323000.1.cds1, TraesCS7B02G074900.1.cds1, TraesCS7B02G160500.1.cds1, TraesCS7B02G223900.1.cds1, TraesCS7D02G170900.1.cds1, TraesCS7D02G263400.1.cds1, TraesCS7D02G319600.1.cds1
Poaceae	Zea mays	14	Zm00001eb037960_P001, Zm00001eb100380_P001 ... Zm00001eb148990_P001, Zm00001eb155300_P001, Zm00001eb159960_P004, Zm00001eb174220_P001, Zm00001eb174240_P001, Zm00001eb174260_P001, Zm00001eb174280_P001, Zm00001eb176650_P001, Zm00001eb260340_P001, Zm00001eb294390_P001, Zm00001eb314810_P001, Zm00001eb356930_P002
Poaceae	Zoysia japonica	13	nbis-gene-11515, nbis-gene-12701, nbis-gene-17190 ... nbis-gene-19684, nbis-gene-21499, nbis-gene-25004, nbis-gene-26260, nbis-gene-30625, nbis-gene-31515, nbis-gene-41397, nbis-gene-47284, nbis-gene-47733, nbis-gene-51947
Poaceae	Zoysia macrostachya	12	Zma_g10427, Zma_g11470, Zma_g22349, Zma_g23122, Zma_g23497 ... Zma_g24211, Zma_g28700, Zma_g30432, Zma_g32661, Zma_g8077, Zma_g8507, Zma_g8930
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.257, evm.TU.LG03.2459, evm.TU.LG04.498 ... evm.TU.LG06.1142, evm.TU.LG07.1630, evm.TU.LG11.372, evm.TU.LG15.1593, evm.TU.LG16.829, evm.TU.LG17.1504
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g37300, gene.Posoc02g30710, gene.Posoc03g21480 ... gene.Posoc04g18170, gene.Posoc05g18100, gene.Posoc08g11750, gene.Posoc09g03760
Rhizophoraceae	Bruguiera sexangula	11	evm.TU.57735.6, evm.TU.58473.5, evm.TU.58474.5 ... evm.TU.Scaffold_10_RagTag.1327, evm.TU.Scaffold_1_RagTag.1843, evm.TU.Scaffold_2_RagTag.604, evm.TU.Scaffold_3_RagTag.1012, evm.TU.Scaffold_3_RagTag.356, evm.TU.Scaffold_6_RagTag.1562, evm.TU.Scaffold_6_RagTag.1872, evm.TU.Scaffold_8_RagTag.965
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-17271, nbisL1-mrna-17626, nbisL1-mrna-19174 ... nbisL1-mrna-27803, nbisL1-mrna-4598, nbisL1-mrna-611, nbisL1-mrna-697, nbisL1-mrna-8877
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-11860, nbisL1-mrna-1367, nbisL1-mrna-14753 ... nbisL1-mrna-17852, nbisL1-mrna-18077, nbisL1-mrna-8058, nbisL1-mrna-8135
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-11910, nbisL1-mrna-12217, nbisL1-mrna-3678 ... nbisL1-mrna-6079, nbisL1-mrna-6598, nbisL1-mrna-8012, nbisL1-mrna-8793, nbisL1-mrna-9596
Rhizophoraceae	Kandelia candel	9	add.evm.TU.utg000002l.224, add.evm.TU.utg000009l.392 ... add.evm.TU.utg000011l.363, add.evm.TU.utg000011l.466, add.evm.TU.utg000016l.297, add.evm.TU.utg000018l.118, add.evm.TU.utg000019l.426, evm.TU.utg000004l.87, evm.TU.utg000023l.88
Rhizophoraceae	Kandelia obovata	6	Maker00003816, Maker00004052, Maker00007711, Maker00012682 ... Maker00017112, Maker00018732
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-16430, nbisL1-mrna-18707, nbisL1-mrna-19342 ... nbisL1-mrna-19693, nbisL1-mrna-21261, nbisL1-mrna-22850, nbisL1-mrna-23007
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-13781, nbisL1-mrna-16674, nbisL1-mrna-17943 ... nbisL1-mrna-21366, nbisL1-mrna-2227, nbisL1-mrna-23661, nbisL1-mrna-23837, nbisL1-mrna-3217
Salicaceae	Populus euphratica	10	populus_peu02661, populus_peu11451, populus_peu13631 ... populus_peu14394, populus_peu22794, populus_peu23387, populus_peu25413, populus_peu25434, populus_peu31989, populus_peu37083
Solanaceae	Lycium barbarum	8	gene-LOC132602547, gene-LOC132615253, gene-LOC132618553 ... gene-LOC132623106, gene-LOC132623351, gene-LOC132630898, gene-LOC132634374, gene-LOC132645755
Solanaceae	Solanum chilense	7	SOLCI001532400, SOLCI002153800, SOLCI002191400 ... SOLCI003503700, SOLCI003838400, SOLCI004167400, SOLCI006406000
Solanaceae	Solanum pennellii	6	gene-LOC107004345, gene-LOC107006988, gene-LOC107010721 ... gene-LOC107012784, gene-LOC107017223, gene-LOC107021357
Tamaricaceae	Reaumuria soongarica	1	gene_1729
Tamaricaceae	Tamarix chinensis	1	TC04G2534
Zosteraceae	Zostera marina	8	Zosma01g08760.v3.1, Zosma01g32450.v3.1, Zosma02g04420.v3.1 ... Zosma02g21750.v3.1, Zosma03g13750.v3.1, Zosma05g10890.v3.1, Zosma05g12940.v3.1, Zosma06g16780.v3.1