Basic Information
Locus ID:
gene.Cymno05g17940
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
C2HE / C2H2 / C2HC zinc-binding finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 24202199 | 24214126 | + | gene.Cymno05g17940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 102,593.33 Da | 39.72 | 84.74 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16278 | C2HE / C2H2 / C2HC zinc-binding finger | 847 | 898 | 4.2E-7 | IPR032566 |
| Pfam | PF13671 | AAA domain | 200 | 328 | 1.3E-13 | - |
| Pfam | PF11969 | Scavenger mRNA decapping enzyme C-term binding | 737 | 842 | 2.3E-23 | - |
| Pfam | PF01661 | Macro domain | 537 | 645 | 3.6E-8 | IPR002589 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 444 | 491 | 7.74E-7 | IPR043472 |
| SUPERFAMILY | SSF54197 | HIT-like | 736 | 885 | 5.27E-36 | IPR036265 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 493 | 645 | 2.86E-19 | IPR043472 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 196 | 343 | 1.9E-14 | IPR027417 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 497 | 652 | 3.2E-21 | IPR043472 |
| Gene3D | G3DSA:3.40.50.300 | - | 183 | 357 | 8.4E-35 | IPR027417 |
| Gene3D | G3DSA:3.30.428.10 | - | 724 | 904 | 2.3E-49 | IPR036265 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 439 | 496 | 3.1E-6 | IPR043472 |
| SMART | SM00506 | YBR022w_8 | 514 | 641 | 0.0044 | IPR002589 |
| ProSiteProfiles | PS51154 | Macro domain profile. | 502 | 685 | 11.894607 | IPR002589 |
| ProSitePatterns | PS00892 | HIT domain signature. | 811 | 829 | - | IPR019808 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 196 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01310.1 | APRATAXIN-like. Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro. | 0 |
| RefSeq | XP_008789140.2 | transcription factor bHLH140 isoform X2 [Phoenix dactylifera] | 0 |
| Q9M041 | Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9NSS8 | APRATAXIN-like OS=Zostera marina OX=29655 GN=ZOSMA_64G00580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2277 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003299 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4795, Sbi_jg7283 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001443 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51677, Sgl56981 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005809, gene:ENSEOMG00000023602 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010450, CQ.Regalona.r1.5BG0010950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267340 |
| Apiaceae | Apium graveolens | 1 | Ag6G01946 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706712 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.495.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08666, Ftri15G17084 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012562m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g058190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1009 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0376s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32360 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.980, evm.TU.LG01.982 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09237 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3981, BH01.4373, CH01.4613 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244360, gene-QOZ80_3BG0283800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384570.1 |
| Poaceae | Oryza coarctata | 1 | Oco06G010940 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G388500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102425, Pt_Chr0102453 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G032100, Chr04G008750, Chr07G002940 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G345200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015300, gene_TRIDC4BG033670 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G110800.1, TraesCS4B02G193300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb013510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3609 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2826, evm.TU.LG16.826 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.608 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4584, nbisL1-mrna-4594 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9572 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9592 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1001 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16677 |
| Salicaceae | Populus euphratica | 2 | populus_peu25419, populus_peu25441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630876 |
| Solanaceae | Solanum chilense | 1 | SOLCI001532700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13211 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2788 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13730.v3.1 |