Basic Information
Locus ID:
gene.Cymno05g16630
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 23222375 | 23246194 | - | gene.Cymno05g16630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 103,857.88 Da | 47.50 | 76.82 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 200 | 401 | 2.11578E-85 | - |
| Pfam | PF16124 | RecQ zinc-binding | 663 | 721 | 8.2E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 556 | 649 | 2.0E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 213 | 380 | 5.3E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 249 | 661 | 3.01E-49 | IPR027417 |
| SUPERFAMILY | SSF46934 | UBA-like | 25 | 69 | 3.3E-5 | IPR009060 |
| Gene3D | G3DSA:3.40.50.300 | - | 531 | 658 | 2.9E-32 | IPR027417 |
| Gene3D | G3DSA:1.10.8.10 | - | 25 | 89 | 5.1E-5 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 662 | 841 | 1.7E-19 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 177 | 402 | 2.5E-71 | IPR027417 |
| SMART | SM00490 | helicmild6 | 569 | 650 | 3.9E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 206 | 411 | 4.8E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 200 | 414 | 7.9E-68 | IPR004589 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 21 | 62 | 10.787806 | IPR015940 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 218 | 394 | 22.505442 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 537 | 703 | 16.225281 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 896 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27680.1 | RECQ helicase SIM. DNA helicase | 0 |
| RefSeq | XP_038977383.1 | ATP-dependent DNA helicase Q-like SIM isoform X1 [Phoenix dactylifera] | 0 |
| Q9FT69 | ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana OX=3702 GN=RECQSIM PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9A0P9 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC120107927 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10417 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g075670 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17119, Sbi_jg61665, Sbi_jg61673, Sbi_jg61701 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg383 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015309 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24502, Sgl29682 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009820, gene:ENSEOMG00000042149 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008220, CQ.Regalona.r1.4BG0008360 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30082670, pistato.v30082770 |
| Apiaceae | Apium graveolens | 1 | Ag7G01602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G002140 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718623, gene-LOC120107927 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_08.3142.V1.1, AsparagusV1_08.3143.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G00010 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G27680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g079050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1180 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1233 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g03780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2463 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039255 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06671 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.995, BH05.1039, CH05.1193 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0404780, gene-QOZ80_5BG0452900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0022490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009661 |
| Poaceae | Oryza coarctata | 1 | Oco10G002500 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G046000, gene-BS78_K087100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501983, Pt_Chr0502104 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G000990, Chr22G015110 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G188300, Tel1E01G188400 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G091400.2, TraesCS1B02G119200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb354210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27709 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1243, evm.TU.LG20.639 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g33070, gene.Posoc01g33090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.125 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8149 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5205 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.91 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010915 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-113 |
| Salicaceae | Populus euphratica | 1 | populus_peu13373 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645940 |
| Solanaceae | Solanum chilense | 1 | SOLCI001648600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008462 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6394 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0938 |
| Zosteraceae | Zostera marina | 1 | Zosma04g22180.v3.1 |