Basic Information
Locus ID:
gene.Cymno05g16380
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 23060711 | 23073999 | - | gene.Cymno05g16380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 68,644.91 Da | 50.93 | 73.50 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 127 | 182 | 1.5E-10 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 335 | 367 | 3.1E-8 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 367 | 416 | 2.88E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 435 | 509 | 2.02E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 365 | 436 | 3.0E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 442 | 503 | 1.7E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 443 | 499 | 0.0074 | IPR001965 |
| SMART | SM00249 | PHD_3 | 370 | 411 | 1.1E-7 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 368 | 413 | 9.997299 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_042478365.1 | uncharacterized protein LOC122059565 isoform X2 [Macadamia integrifolia] | 0 |
| O15164 | Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3 | 0 | |
| TrEMBL | A0A200R6F2 | Zinc finger protein OS=Macleaya cordata OX=56857 GN=BVC80_1835g740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology