Basic Information
Locus ID:
gene.Cymno05g15770
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 22516914 | 22522781 | - | gene.Cymno05g15770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 209,628.77 Da | 44.51 | 73.93 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 414 | 500 | 2.37552E-27 | - |
| CDD | cd00590 | RRM_SF | 1023 | 1081 | 2.36957E-4 | - |
| Pfam | PF00855 | PWWP domain | 414 | 499 | 6.9E-19 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1008 | 1078 | 1.05E-5 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 413 | 532 | 3.67E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 404 | 509 | 1.4E-25 | - |
| SMART | SM00384 | AT_hook_2 | 862 | 874 | 1.8 | IPR017956 |
| SMART | SM00293 | PWWP_4 | 414 | 475 | 1.5E-9 | IPR000313 |
| SMART | SM00384 | AT_hook_2 | 944 | 956 | 500.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 837 | 849 | 2.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 888 | 900 | 0.64 | IPR017956 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 416 | 477 | 15.872717 | IPR000313 |
| PRINTS | PR00929 | AT-hook-like domain signature | 886 | 896 | 2.5E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 837 | 847 | 2.5E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 860 | 871 | 2.5E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1371 | 1390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1901 | 1931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1892 | 1931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 908 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_008805031.1 | uncharacterized protein LOC103718133 isoform X5 [Phoenix dactylifera] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P3U9 | PWWP domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_3G01350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology