Basic Information
Locus ID:
gene.Cymno05g15080
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 21970294 | 21973167 | - | gene.Cymno05g15080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 64,823.10 Da | 64.92 | 55.02 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 546 | 577 | 2.0E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 445 | 529 | 6.8E-20 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 445 | 530 | 1.3E-31 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 417 | - | - |
| Coils | Coil | Coil | 437 | 471 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_043725242.1 | nucleolin 1-like isoform X1 [Telopea speciosissima] | 0 |
| TrEMBL | A0A8B7BLR5 | protein starmaker-like OS=Phoenix dactylifera OX=42345 GN=LOC103700982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology