Basic Information
Locus ID:
gene.Cymno05g13160
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 20593754 | 20626173 | + | gene.Cymno05g13160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 102,936.56 Da | 39.27 | 86.25 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 6 | 200 | 6.04541E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 201 | 336 | 1.66513E-53 | - |
| Pfam | PF14493 | Helix-turn-helix domain | 658 | 751 | 8.3E-16 | IPR029491 |
| Pfam | PF00570 | HRDC domain | 552 | 618 | 5.1E-14 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 222 | 326 | 2.2E-21 | IPR001650 |
| Pfam | PF09382 | RQC domain | 405 | 502 | 1.8E-21 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 353 | 401 | 1.3E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 20 | 180 | 3.0E-21 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 547 | 627 | 2.4E-16 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 57 | 341 | 7.31E-58 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 399 | 503 | 1.5E-24 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 403 | 528 | 3.4E-33 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 201 | 402 | 1.1E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 199 | 4.6E-76 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 547 | 631 | 9.0E-18 | IPR044876 |
| SMART | SM00487 | ultradead3 | 14 | 205 | 1.7E-34 | IPR014001 |
| SMART | SM00956 | RQC_2 | 408 | 512 | 9.7E-23 | IPR018982 |
| SMART | SM00341 | hrdc7 | 548 | 628 | 9.5E-7 | IPR002121 |
| SMART | SM00490 | helicmild6 | 246 | 327 | 5.9E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 7 | 460 | 3.5E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 217 | 368 | 19.173084 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 548 | 628 | 17.753111 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 26 | 193 | 24.039568 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019706458.1 | uncharacterized protein LOC105045099 [Elaeis guineensis] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A1D1YAD1 | ATP-dependent DNA helicase OS=Anthurium amnicola OX=1678845 GN=recQ_11 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology