Basic Information
Locus ID:
gene.Cymno05g11630
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
U-box domain-containing protein 21-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 19311050 | 19312303 | - | gene.Cymno05g11630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 45,046.78 Da | 45.53 | 103.31 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 7 | 49 | 9.06931E-24 | - |
| Pfam | PF04564 | U-box domain | 3 | 75 | 2.2E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 120 | 403 | 1.79E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 78 | 5.74E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 76 | 2.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 97 | 394 | 9.9E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 6 | 70 | 2.3E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 2 | 77 | 35.287262 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010936891.1 | U-box domain-containing protein 21 [Elaeis guineensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SBY4 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056399 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology