Basic Information
Locus ID:
gene.Cymno05g10930
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18851953 | 18863779 | - | gene.Cymno05g10930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 68,796.02 Da | 43.93 | 93.56 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 63 | 1.5E-10 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 302 | 574 | 1.7E-43 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 164 | 180 | 1.4 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 198 | 2.27E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 279 | 575 | 5.46E-78 | IPR011009 |
| Gene3D | G3DSA:1.20.5.510 | Single helix bin | 226 | 264 | 4.6E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 594 | 1.6E-69 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 209 | 1.9E-62 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 269 | 376 | 8.0E-39 | - |
| SMART | SM00220 | serkin_6 | 300 | 574 | 1.3E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 300 | 584 | 36.301071 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 423 | 435 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 306 | 328 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 623 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_010939572.1 | LRR receptor kinase BAK1 [Elaeis guineensis] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9S9R0 | LRR receptor kinase BAK1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058366 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology