Basic Information
Locus ID:
gene.Cymno05g10860
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18816244 | 18821461 | - | gene.Cymno05g10860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 36,995.01 Da | 47.02 | 91.53 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 39 | 87 | 5.13782E-15 | - |
| Pfam | PF12906 | RING-variant domain | 39 | 86 | 5.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 91 | 9.53E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 101 | 1.2E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 38 | 87 | 8.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 31 | 93 | 20.486994 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008787541.1 | uncharacterized protein LOC103705558 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7BXQ5 | uncharacterized protein LOC103705558 OS=Phoenix dactylifera OX=42345 GN=LOC103705558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology