halophFGD

Basic Information

Locus ID: gene.Cymno05g10600

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: Tobamovirus multiplication

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	18665343	18677283	-	gene.Cymno05g10600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.62	94,698.54 Da	45.59	82.66	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06454	Protein of unknown function (DUF1084)	573	841	2.7E-124	IPR009457
Pfam	PF00656	Caspase domain	98	313	6.6E-47	-
Pfam	PF06943	LSD1 zinc finger	8	31	5.9E-6	IPR005735
SUPERFAMILY	SSF52129	Caspase-like	95	207	6.91E-5	IPR029030
Gene3D	G3DSA:3.40.50.12660	-	78	330	1.2E-89	-
TIGRFAM	TIGR01053	LSD1: zinc finger domain, LSD1 subclass	8	34	3.7E-7	IPR005735
MobiDBLite	mobidb-lite	consensus disorder prediction	440	457	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	414	522	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	419	433	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21790.1	tobamovirus multiplication 1. encodes a host factor that is required for TMV virus multiplication.
RefSeq	XP_008802197.2	tobamovirus multiplication protein 1-like [Phoenix dactylifera]
Swiss-Prot	Q9FEG2	Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1
TrEMBL	A0A8B7CMB1	tobamovirus multiplication protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103716107 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14150, jg2472, jg26335, jg28488, jg28489, jg28490
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15176, gene_21838
Amaranthaceae	Atriplex hortensis	2	Ah003426, Ah009789
Amaranthaceae	Beta vulgaris	2	BVRB_5g102510, BVRB_9g215180
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12091, Sbi_jg29113, Sbi_jg3326, Sbi_jg47020 ... Sbi_jg4710, Sbi_jg7367
Amaranthaceae	Salicornia europaea	4	Seu_jg12656, Seu_jg21297, Seu_jg24350, Seu_jg6608
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000134, GOSA_00001393, GOSA_00009647
Amaranthaceae	Suaeda glauca	7	Sgl11447, Sgl16825, Sgl16827, Sgl51733, Sgl57038, Sgl59836 ... Sgl76410
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000004142, gene:ENSEOMG00000012609 ... gene:ENSEOMG00000015967, gene:ENSEOMG00000022936, gene:ENSEOMG00000026731, gene:ENSEOMG00000033034, gene:ENSEOMG00000048422, gene:ENSEOMG00000052795
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0007720, CQ.Regalona.r1.2BG0021790 ... CQ.Regalona.r1.5AG0009750, CQ.Regalona.r1.5BG0010230, CQ.Regalona.r1.7BG0003970, CQ.Regalona.r1.9AG0020600
Anacardiaceae	Pistacia vera	10	pistato.v30001300, pistato.v30011110, pistato.v30011120 ... pistato.v30011130, pistato.v30012880, pistato.v30012890, pistato.v30215120, pistato.v30215150, pistato.v30249220, pistato.v30275010
Apiaceae	Apium graveolens	5	Ag10G00339, Ag2G02630, Ag7G00821, Ag7G00822, Ag9G00318
Arecaceae	Cocos nucifera	4	COCNU_03G007240, COCNU_08G006840, COCNU_10G003150 ... scaffold026768G000040
Arecaceae	Phoenix dactylifera	3	gene-LOC103701546, gene-LOC103704623, gene-LOC103716337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1825.V1.1, AsparagusV1_04.3150.V1.1 ... AsparagusV1_Unassigned.733.V1.1
Asteraceae	Flaveria trinervia	13	Ftri12G06117, Ftri12G13463, Ftri12G25201, Ftri12G26369 ... Ftri12G26555, Ftri14G14137, Ftri15G24451, Ftri15G33585, Ftri18G07289, Ftri18G32209, Ftri5G24390, Ftri7G23470, Ftri8G23782
Brassicaceae	Arabidopsis thaliana	3	AT1G02170.1, AT4G25110.1, AT5G64240.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10004433m.g.v1.0, Thhalv10004470m.g.v1.0 ... Thhalv10025190m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g00070.v2.2, Sp2g27300.v2.2, Sp7g23100.v2.2
Brassicaceae	Brassica nigra	4	BniB02g002790.2N, BniB04g001450.2N, BniB05g012120.2N ... BniB06g012450.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G1374, Ceq05G1015, Ceq09G0637, Ceq09G0638, Ceq09G0645
Casuarinaceae	Casuarina glauca	6	Cgl03G1488, Cgl03G1507, Cgl05G1024, Cgl09G0683, Cgl09G0695 ... Cgl09G0696
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g10600, gene.Cymno12g04220, gene.Cymno15g04150
Dunaliellaceae	Dunaliella salina	1	Dusal.0285s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g12170, gene.Thate02g04300, gene.Thate05g07780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9410
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG04.29, evm.TU.LG05.516, evm.TU.LG05.517 ... evm.TU.LG08.1198, evm.TU.LG08.1201, evm.TU.LG08.1203
Plantaginaceae	Plantago ovata	3	Pov_00020274, Pov_00036057, Pov_00039799
Plumbaginaceae	Limonium bicolor	2	Lb3G16341, Lb3G18147
Poaceae	Echinochloa crus-galli	20	AH01.2861, AH01.3426, AH01.3427, AH01.3428, BH01.3199 ... BH01.3780, BH01.3781, BH01.3782, BH01.3783, BH02.2207, BH04.1759, BH05.3257, BH07.2038, BH09.30, CH01.3437, CH01.4030, CH01.4031, CH01.4032, CH01.4033, CH01.4035
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_2AG0117110, gene-QOZ80_2BG0170780 ... gene-QOZ80_3AG0250630, gene-QOZ80_3AG0250640, gene-QOZ80_3AG0250650, gene-QOZ80_3AG0250690, gene-QOZ80_3AG0250700, gene-QOZ80_3AG0250730, gene-QOZ80_3AG0250740, gene-QOZ80_3BG0277490, gene-QOZ80_3BG0277500, gene-QOZ80_3BG0277510, gene-QOZ80_3BG0277530, gene-QOZ80_3BG0277540
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0057410.1, HORVU.MOREX.r3.1HG0072450.1 ... HORVU.MOREX.r3.3HG0237920.1, HORVU.MOREX.r3.3HG0311630.1, HORVU.MOREX.r3.4HG0341320.1, HORVU.MOREX.r3.4HG0418190.1, HORVU.MOREX.r3.5HG0444440.1
Poaceae	Lolium multiflorum	11	gene-QYE76_000271, gene-QYE76_012791, gene-QYE76_016489 ... gene-QYE76_016490, gene-QYE76_067534, gene-QYE76_067537, gene-QYE76_067540, gene-QYE76_067543, gene-QYE76_067544, gene-QYE76_067545, gene-QYE76_067547
Poaceae	Oryza coarctata	6	Oco05G015010, Oco05G015020, Oco06G015420, Oco06G015440 ... Oco06G015450, Oco19G010500
Poaceae	Oryza sativa	4	LOC_Os03g27120.1, LOC_Os03g27170.1, LOC_Os03g27190.1 ... LOC_Os03g27210.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G078400, gene-BS78_01G282000 ... gene-BS78_01G331800, gene-BS78_01G331900, gene-BS78_01G332000, gene-BS78_01G332300, gene-BS78_01G332400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503241, Pt_Chr0503282
Poaceae	Sporobolus alterniflorus	7	Chr01G025090, Chr01G025100, Chr01G025110, Chr04G012700 ... Chr07G012100, Chr09G005350, Chr13G019490
Poaceae	Thinopyrum elongatum	9	Tel1E01G367000, Tel1E01G731000, Tel3E01G196300 ... Tel3E01G692700, Tel4E01G115600, Tel4E01G115700, Tel4E01G620900, Tel4E01G621700, Tel5E01G179200
Poaceae	Triticum dicoccoides	17	gene_TRIDC1AG032570, gene_TRIDC1AG063470 ... gene_TRIDC1BG037910, gene_TRIDC1BG072750, gene_TRIDC3AG014150, gene_TRIDC3AG061990, gene_TRIDC3BG018720, gene_TRIDC3BG069510, gene_TRIDC3BG082110, gene_TRIDC4AG038380, gene_TRIDC4BG011040, gene_TRIDC4BG062510, gene_TRIDC4BG062630, gene_TRIDC5AG014150, gene_TRIDC5AG077460, gene_TRIDC5AG077500, gene_TRIDC5BG016130
Poaceae	Triticum aestivum	24	TraesCS1A02G215600.1, TraesCS1A02G432800.1 ... TraesCS1B02G229100.2, TraesCS1B02G468600.1, TraesCS1D02G218100.1, TraesCS1D02G442100.1, TraesCS3A02G114300.1, TraesCS3A02G437700.1, TraesCS3B02G133900.1, TraesCS3B02G471700.1, TraesCS3B02G568100.1, TraesCS3D02G116800.1, TraesCS3D02G430000.1, TraesCS4A02G243300.1, TraesCS4B02G071900.1, TraesCS4B02G381800.1, TraesCS4B02G383100.1, TraesCS4D02G070500.1, TraesCS4D02G358100.1, TraesCS4D02G358800.1, TraesCS5A02G091300.1, TraesCS5A02G548200.1, TraesCS5A02G548600.1, TraesCS5D02G103400.1
Poaceae	Zea mays	8	Zm00001eb018900_P001, Zm00001eb018910_P001 ... Zm00001eb018930_P001, Zm00001eb023930_P001, Zm00001eb239630_P001, Zm00001eb390830_P001, Zm00001eb392460_P002, Zm00001eb392470_P002
Poaceae	Zoysia japonica	7	nbis-gene-12015, nbis-gene-38043, nbis-gene-49268 ... nbis-gene-52187, nbis-gene-52190, nbis-gene-52191, nbis-gene-56146
Poaceae	Zoysia macrostachya	6	Zma_g1086, Zma_g12938, Zma_g15709, Zma_g3514, Zma_g3515 ... Zma_g3516
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1931, evm.TU.LG04.2881, evm.TU.LG09.27 ... evm.TU.LG10.523, evm.TU.LG16.753, evm.TU.LG17.532, evm.TU.LG19.660, evm.TU.LG24.650
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g23080, gene.Posoc07g05750, gene.Posoc09g02470
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.48659.1, evm.TU.Scaffold_11_RagTag.1221 ... evm.TU.Scaffold_1_RagTag.998, evm.TU.Scaffold_4_RagTag.275, evm.TU.Scaffold_8_RagTag.1472
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-12408, nbisL1-mrna-12519, nbisL1-mrna-3986 ... nbisL1-mrna-6618, nbisL1-mrna-6619, nbisL1-mrna-8473, nbisL1-mrna-8474
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-11523, nbisL1-mrna-11524, nbisL1-mrna-17495 ... nbisL1-mrna-17878, nbisL1-mrna-18643, nbisL1-mrna-6888
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-12791, nbisL1-mrna-15201, nbisL1-mrna-18936 ... nbisL1-mrna-18937, nbisL1-mrna-2024, nbisL1-mrna-21197
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000008l.174, evm.TU.utg000009l.388 ... evm.TU.utg000009l.389, evm.TU.utg000010l.268, evm.TU.utg000018l.141
Rhizophoraceae	Kandelia obovata	3	Maker00000597, Maker00003256, Maker00008997
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-11105, nbisL1-mrna-17686, nbisL1-mrna-2451 ... nbisL1-mrna-2820, nbisL1-mrna-2821, nbisL1-mrna-596, nbisL1-mrna-9481
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-18841, nbisL1-mrna-21733, nbisL1-mrna-21866 ... nbisL1-mrna-21867, nbisL1-mrna-6141, nbisL1-mrna-6143, nbisL1-mrna-6145, nbisL1-mrna-8859
Salicaceae	Populus euphratica	6	populus_peu24207, populus_peu24208, populus_peu24209 ... populus_peu24210, populus_peu30405, populus_peu30408
Solanaceae	Lycium barbarum	7	gene-LOC132598793, gene-LOC132598796, gene-LOC132598797 ... gene-LOC132598798, gene-LOC132611161, gene-LOC132642286, gene-LOC132645835
Solanaceae	Solanum chilense	5	SOLCI001225300, SOLCI001872900, SOLCI004264400 ... SOLCI006469500, SOLCI007340600
Solanaceae	Solanum pennellii	6	gene-LOC107008285, gene-LOC107012799, gene-LOC107015409 ... gene-LOC107020478, gene-LOC107030243, gene-LOC107030632
Tamaricaceae	Reaumuria soongarica	2	gene_16189, gene_9233
Tamaricaceae	Tamarix chinensis	2	TC09G0324, TC10G0043
Zosteraceae	Zostera marina	10	Zosma01g29620.v3.1, Zosma01g29660.v3.1, Zosma02g17990.v3.1 ... Zosma02g20430.v3.1, Zosma03g31400.v3.1, Zosma04g12760.v3.1, Zosma04g12770.v3.1, Zosma04g12860.v3.1, Zosma06g05700.v3.1, Zosma06g05710.v3.1