Basic Information
Locus ID:
gene.Cymno05g09400
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 17705892 | 17715036 | + | gene.Cymno05g09400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 46,296.28 Da | 38.85 | 70.59 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.01466E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.21234E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 332 | 4.25898E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 327 | 8.3E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 2.1E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 4.1E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 347 | 5.78E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 225 | 4.03E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 3.76E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 233 | 1.1E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 235 | 338 | 9.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.3E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 1.6E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 4.4E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 330 | 9.0E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 16.073748 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 334 | 15.903193 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.966896 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_008801437.2 | oligouridylate-binding protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J9H3 | oligouridylate-binding protein 1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103715545 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology