Basic Information
Locus ID:
gene.Cymno05g08760
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 17291382 | 17297161 | - | gene.Cymno05g08760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 62,236.78 Da | 43.23 | 80.78 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 171 | 290 | 1.1E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 306 | 356 | 3.0E-6 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 135 | 164 | 2.6E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 396 | 459 | 3.79E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 102 | 354 | 5.75E-47 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 91 | 226 | 5.6E-31 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 469 | 5.2E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 227 | 369 | 5.8E-23 | IPR036770 |
| SMART | SM00248 | ANK_2a | 166 | 195 | 0.0075 | IPR002110 |
| SMART | SM00248 | ANK_2a | 200 | 231 | 9.0 | IPR002110 |
| SMART | SM00184 | ring_2 | 403 | 449 | 9.6E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 263 | 292 | 2.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 133 | 162 | 3.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 306 | 335 | 0.015 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 263 | 295 | 12.9031 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 133 | 165 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 166 | 197 | 9.038475 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 263 | 292 | 12.195709 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 200 | 221 | 9.065006 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 200 | 221 | 9.08357 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 166 | 198 | 10.12526 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 133 | 164 | 12.407959 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 403 | 450 | 9.833738 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 306 | 338 | 10.20539 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 306 | 333 | 9.038475 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 418 | 427 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008779779.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A804IK36 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103980290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology