Basic Information
Locus ID:
gene.Cymno05g07680
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 15903057 | 15921395 | - | gene.Cymno05g07680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 36,173.94 Da | 41.60 | 68.35 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 243 | 304 | 2.79747E-13 | - |
| CDD | cd16872 | ARID_HMGB9-like | 60 | 145 | 2.64854E-43 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 64 | 145 | 2.9E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 243 | 308 | 1.8E-6 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 229 | 311 | 4.32E-17 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 56 | 155 | 1.09E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 52 | 159 | 3.0E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 227 | 320 | 3.4E-16 | IPR036910 |
| SMART | SM01014 | ARID_2 | 55 | 145 | 3.1E-27 | - |
| SMART | SM00398 | hmgende2 | 242 | 309 | 2.3E-8 | IPR009071 |
| SMART | SM00501 | bright_3 | 59 | 150 | 1.2E-29 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 243 | 308 | 10.863073 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 58 | 149 | 25.680412 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034679105.1 | high mobility group B protein 10 isoform X2 [Vitis riparia] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YQJ4 | High mobility group B protein 10 (Fragment) OS=Anthurium amnicola OX=1678845 GN=HMGB10_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology