Basic Information
Locus ID:
gene.Cymno05g06030
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 6322820 | 6347822 | + | gene.Cymno05g06030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.99 | 125,541.48 Da | 70.33 | 59.87 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 710 | 839 | 3.91678E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 722 | 830 | 1.1E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 515 | 684 | 2.0E-47 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 51 | 1.16E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 563 | 846 | 8.15E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 701 | 872 | 3.6E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 467 | 700 | 1.1E-83 | IPR027417 |
| SMART | SM00487 | ultradead3 | 510 | 713 | 4.6E-63 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 2.0E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 746 | 830 | 1.3E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 491 | 519 | 10.105238 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 10.6989 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 522 | 696 | 30.723074 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 725 | 869 | 24.779888 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 642 | 650 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 991 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 216 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021684464.1 | DEAD-box ATP-dependent RNA helicase 46 [Hevea brasiliensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PRG2 | RNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_193G00430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology