Basic Information
Locus ID:
gene.Cymno05g05790
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 5379551 | 5400388 | - | gene.Cymno05g05790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 44,654.56 Da | 71.43 | 55.99 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 346 | 386 | 1.04939E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 345 | 391 | 2.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 346 | 392 | 1.03E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 330 | 396 | 5.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 347 | 385 | 5.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 347 | 386 | 11.471321 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039128000.1 | probable E3 ubiquitin-protein ligase LUL4 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PPE6 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_18G00390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology