Basic Information
Locus ID:
gene.Cymno05g05610
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 4824601 | 4882612 | + | gene.Cymno05g05610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 95,959.16 Da | 56.76 | 78.70 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 24 | 123 | 5.90669E-12 | - |
| CDD | cd00159 | RhoGAP | 184 | 321 | 4.00957E-34 | - |
| Pfam | PF00169 | PH domain | 23 | 127 | 5.0E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 184 | 328 | 9.4E-32 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 613 | 693 | 5.7E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 17 | 134 | 1.04E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 184 | 378 | 1.94E-35 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 129 | 5.0E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 152 | 377 | 1.9E-42 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 181 | 372 | 2.0E-28 | IPR000198 |
| SMART | SM00233 | PH_update | 22 | 130 | 4.0E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 21 | 128 | 14.9359 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 175 | 375 | 30.027479 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 776 | - | - |
| Coils | Coil | Coil | 662 | 696 | - | - |
| Coils | Coil | Coil | 820 | 847 | - | - |
| Coils | Coil | Coil | 603 | 637 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_008803350.2 | rho GTPase-activating protein 7-like [Phoenix dactylifera] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CP77 | rho GTPase-activating protein 7-like OS=Phoenix dactylifera OX=42345 GN=LOC103716927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology