Basic Information
Locus ID:
gene.Cymno05g05240
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 4398137 | 4400877 | + | gene.Cymno05g05240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 11,853.22 Da | 92.19 | 55.79 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47072 | Cysteine alpha-hairpin motif | 42 | 84 | 5.62E-6 | IPR009069 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18920.1 | Cox19-like CHCH family protein. | 0 |
| RefSeq | XP_006365282.1 | PREDICTED: uncharacterized protein LOC102594976 [Solanum tuberosum] | 0 |
| TrEMBL | A0A1R3G6R0 | CHCH domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4571 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022197 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58894, Sbi_jg63718 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23173 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012974 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl03022 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011788, gene:ENSEOMG00000032137 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023240, CQ.Regalona.r1.3BG0023920 |
| Arecaceae | Cocos nucifera | 1 | scaffold006566G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696014 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G27588 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015193m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g043900.2N, BniB08g009580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1258 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1344, Cgl09G1346 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g15950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4174 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1406 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00034500, Pov_00034502 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00109 |
| Poaceae | Echinochloa crus-galli | 1 | BH05.2600 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0422560 |
| Poaceae | Oryza coarctata | 2 | Oco09G009160, Oco10G009300 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G139600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505185 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G017160, Chr18G008850 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037780, gene_TRIDC1BG043310 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G252500.1, TraesCS1B02G265500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb349880_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28215 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1342, evm.TU.LG21.987 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.510 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14766 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6233 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.910 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6306 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2062 |
| Salicaceae | Populus euphratica | 1 | populus_peu28400 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645032 |
| Solanaceae | Solanum chilense | 1 | SOLCI005629300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012728 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17540 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20520.v3.1 |