Basic Information
Locus ID:
gene.Cymno05g04880
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 4018583 | 4022101 | - | gene.Cymno05g04880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 65,436.90 Da | 38.66 | 96.55 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 20 | 58 | 4.5E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 8.9E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 38 | 547 | 8.04E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 57 | 8.8E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 589 | 4.2E-169 | IPR032675 |
| SMART | SM00256 | fbox_2 | 21 | 62 | 6.5E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 4.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 72.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 25.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_008804585.2 | transport inhibitor response 1-like protein Os05g0150500 [Phoenix dactylifera] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NLC3 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_8G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology