Basic Information
Locus ID:
gene.Cymno05g04840
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Double-stranded RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 3966373 | 3970397 | - | gene.Cymno05g04840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 39,170.43 Da | 55.69 | 90.70 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 97 | 139 | 9.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 86 | 194 | 7.85E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 84 | 197 | 7.0E-11 | - |
| SMART | SM00256 | fbox_2 | 100 | 140 | 2.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 94 | 140 | 9.285514 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010938713.1 | uncharacterized protein LOC105057717 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9S743 | uncharacterized protein LOC105057717 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105057717 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27990 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18755 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020774 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59763, Sbi_jg62804 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24042 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016196, gene:ENSEOMG00000019870 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0016180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30238500 |
| Apiaceae | Apium graveolens | 1 | Ag9G01836 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G003020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463024 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G05983 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15563.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026419m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g020630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1212 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04830, gene.Cymno05g04840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0564s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g27520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1358 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026195 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04310, Lb2G11585 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2699, BH05.2795, CH05.2881 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0375690, gene-QOZ80_5BG0423010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0059840.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018307 |
| Poaceae | Oryza coarctata | 2 | Oco09G007990, Oco10G008230 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g30920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G122800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505279, Pt_Chr0505311 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G021770, Chr12G016170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G391200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG035600, gene_TRIDC1BG040700 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G236400.1, TraesCS1B02G247300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb285420_P001, Zm00001eb351020_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38763, nbis-gene-54394 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28106 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2077, evm.TU.LG14.376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10310 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1424 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.885 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012624 |
| Salicaceae | Populus euphratica | 2 | populus_peu07888, populus_peu07905 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626822 |
| Solanaceae | Solanum chilense | 1 | SOLCI002677500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012873 |
| Zosteraceae | Zostera marina | 2 | Zosma03g14710.v3.1, Zosma03g14720.v3.1 |