Basic Information
Locus ID:
gene.Cymno05g04750
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 3788870 | 3792755 | - | gene.Cymno05g04750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 88,326.64 Da | 52.54 | 60.77 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 380 | 407 | 2.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 346 | 374 | 3.4E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 339 | 375 | 1.24E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 338 | 376 | 6.5E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 377 | 408 | 4.0E-8 | - |
| SMART | SM00547 | zf_4 | 381 | 405 | 0.018 | IPR001876 |
| SMART | SM00547 | zf_4 | 348 | 372 | 2.3E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 346 | 375 | 10.071154 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 379 | 408 | 9.325869 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 383 | 402 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 350 | 369 | - | IPR001876 |
| Coils | Coil | Coil | 60 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_008777783.2 | uncharacterized protein LOC103697653 [Phoenix dactylifera] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PVB6 | Zinc finger protein VAR3, chloroplastic OS=Zostera marina OX=29655 GN=ZOSMA_156G00350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology