Basic Information
Locus ID:
gene.Cymno05g03130
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 2383612 | 2414532 | + | gene.Cymno05g03130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 318,572.34 Da | 45.00 | 89.58 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1858 | 2168 | 5.4E-18 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 595 | 752 | 1.6E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 839 | 976 | 9.5E-9 | IPR009291 |
| SMART | SM00694 | dysfc | 1567 | 1606 | 3.7E-4 | IPR006614 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_029116588.1 | uncharacterized protein LOC105061294 [Elaeis guineensis] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NNI7 | C2 domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_79G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology