Basic Information
Locus ID:
gene.Cymno05g03120
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 2298262 | 2381725 | + | gene.Cymno05g03120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 157,237.44 Da | 38.45 | 93.59 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 839 | 936 | 0.00336757 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 6.7E-32 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 381 | 2.6E-62 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 803 | 2.2E-31 | IPR031642 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NNI7 | C2 domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_79G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology