Basic Information
Locus ID:
gene.Cymno05g02420
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1746315 | 1760687 | - | gene.Cymno05g02420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 67,875.07 Da | 61.36 | 55.84 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 137 | 187 | 7.08584E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 285 | 333 | 9.4E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 206 | 268 | 5.7E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 275 | 2.12E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 218 | 1.8E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 335 | 2.01E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 568 | 594 | 2.28E-5 | IPR036443 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 218 | 3.3E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 264 | 521 | 1.1E-85 | - |
| SMART | SM00547 | zf_4 | 569 | 593 | 3.1E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 272 | 342 | 0.027 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 206 | 268 | 3.2E-24 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 133 | 346 | 51.08683 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 567 | 594 | 8.264401 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 181 | 9.110841 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 571 | 590 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_020252894.1 | LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI7 [Asparagus officinalis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Z5C2 | RBR-type E3 ubiquitin transferase OS=Anthurium amnicola OX=1678845 GN=ARI7 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology