Basic Information
Locus ID:
gene.Cymno05g01950
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1292478 | 1324608 | - | gene.Cymno05g01950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 114,574.04 Da | 44.73 | 84.27 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 314 | 1.19406E-176 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 350 | 1.4E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 897 | 1002 | 1.8E-9 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 603 | 815 | 1.3E-43 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 355 | 446 | 3.1E-21 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 2.11E-108 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 460 | 1005 | 2.2E-138 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 354 | 447 | 1.37E-27 | IPR028995 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 319 | 396 | 1.7E-30 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 863 | 1.1E-91 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 883 | 1009 | 3.2E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 318 | 7.0E-122 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 397 | 451 | 2.0E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 598 | 2.7E-27 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 355 | 429 | 3.3E-23 | IPR015341 |
| Coils | Coil | Coil | 944 | 964 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_008791035.2 | alpha-mannosidase At3g26720 [Phoenix dactylifera] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q1F5 | Alpha-mannosidase OS=Zostera marina OX=29655 GN=ZOSMA_11G00200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology