Basic Information
Locus ID:
gene.Cymno05g00460
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
associated with SET domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 315999 | 322363 | + | gene.Cymno05g00460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 55,697.64 Da | 53.08 | 70.20 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17907 | AWS domain | 44 | 80 | 3.0E-11 | IPR006560 |
| Pfam | PF00856 | SET domain | 94 | 200 | 1.1E-18 | IPR001214 |
| SUPERFAMILY | SSF82199 | SET domain | 8 | 220 | 1.06E-62 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 2 | 236 | 2.3E-74 | - |
| SMART | SM00317 | set_7 | 83 | 206 | 6.2E-38 | IPR001214 |
| SMART | SM00570 | shorttest3 | 30 | 82 | 2.3E-17 | IPR006560 |
| ProSiteProfiles | PS51215 | AWS domain profile. | 30 | 81 | 14.565855 | IPR006560 |
| ProSiteProfiles | PS50280 | SET domain profile. | 83 | 200 | 19.023399 | IPR001214 |
| ProSiteProfiles | PS50868 | Post-SET domain profile. | 207 | 223 | 9.035879 | IPR003616 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 381 | - | - |
| Coils | Coil | Coil | 401 | 421 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Reaction:
R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine)
R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine)
R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine)
R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76710.1 | SET domain group 26. | 0 |
| RefSeq | XP_031287899.1 | histone-lysine N-methyltransferase ASHH1 [Pistacia vera] | 0 |
| Q84WW6 | Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana OX=3702 GN=ASHH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P7Y1 | Histone-lysine N-methyltransferase OS=Zostera marina OX=29655 GN=ZOSMA_373G00150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5928 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_944 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024536 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39151, Sbi_jg54473 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11006 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022621, GOSA_00022622 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl14534, Sgl14962, Sgl14964, Sgl14965, Sgl19715, Sgl20102 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013356, gene:ENSEOMG00000035716 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0015000, CQ.Regalona.r1.1BG0010940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283000 |
| Apiaceae | Apium graveolens | 1 | Ag7G02146 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701241 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.745.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G24592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G76710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018466m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g055800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1468 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1606 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00460 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0166s00006.v1.0, Dusal.1340s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g01670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1650 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019483 |
| Poaceae | Echinochloa crus-galli | 2 | AH09.1001, CH09.1210 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0317660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168260.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044023 |
| Poaceae | Oryza coarctata | 2 | Oco07G005830, Oco08G005840 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g34976.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G094600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302693, Pt_Chr0302706 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G010930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G533300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043840, gene_TRIDC2BG046490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G302100.1, TraesCS2B02G317900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082920_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37865 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19696 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1303, evm.TU.LG05.1839 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01450 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_8_RagTag.507, evm.TU.Scaffold_8_RagTag.508 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9756 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2221 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18088 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.671 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003809 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9616 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18664 |
| Salicaceae | Populus euphratica | 1 | populus_peu14907 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603218 |
| Solanaceae | Solanum chilense | 5 | SOLCI002911100, SOLCI003178000, SOLCI004321000 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107024743, gene-LOC107026453, gene-LOC107030284 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8643 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2916 |
| Zosteraceae | Zostera marina | 1 | Zosma01g42200.v3.1 |