Basic Information
Locus ID:
gene.Cymno04g17620
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 25834146 | 25835396 | + | gene.Cymno04g17620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 45,388.85 Da | 86.01 | 58.15 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 199 | 240 | 3.24329E-25 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 277 | 379 | 1.9E-40 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.4E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 8 | 38 | 1.8E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 246 | 8.39E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 247 | 4.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 416 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_009387750.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843VY49 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_030522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology