HalophFGD

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Basic Information
Locus ID: gene.Cymno04g17000
Species & Taxonomic ID: Cymodocea nodosa & 55448
Genome Assembly: GCA_036874045.1
Description: BTB POZ domain-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
Chr04 25363715 25365130 - gene.Cymno04g17000
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.51 51,190.61 Da 41.61 78.68 -0.23
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF02214 BTB/POZ domain 12 93 1.9E-12 IPR003131
SUPERFAMILY SSF54695 POZ domain 10 96 1.7E-16 IPR011333
Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 2 100 3.7E-18 IPR011333
SMART SM00225 BTB_4 10 106 5.9E-6 IPR000210
Gene Ontology
Biological Process:
GO:0051260 (protein homooligomerization)
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G09030.1 BTB/POZ domain-containing protein. 0
RefSeq XP_008785402.1 protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 [Phoenix dactylifera] 0
Swiss-Prot Q9S7R7 Protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 OS=Arabidopsis thaliana OX=3702 GN=EAP3 PE=1 SV=1 0
TrEMBL A0A8B7BU38 protein ENDOPLASMIC RETICULUM-ARRESTED PEN3 OS=Phoenix dactylifera OX=42345 GN=LOC103704046 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg14794, jg23483
Aizoaceae Mesembryanthemum crystallinum 2 gene_14732, gene_24901
Amaranthaceae Atriplex hortensis 2 Ah004613, Ah030753
Amaranthaceae Beta vulgaris 2 BVRB_5g100390, BVRB_6g145370
Amaranthaceae Salicornia bigelovii 5 Sbi_jg12309, Sbi_jg23884, Sbi_jg26686, Sbi_jg33878 ...
Sbi_jg7708
Amaranthaceae Salicornia europaea 2 Seu_jg12309, Seu_jg15198
Amaranthaceae Suaeda aralocaspica 2 GOSA_00001173, GOSA_00002153
Amaranthaceae Suaeda glauca 6 Sgl52019, Sgl52043, Sgl54203, Sgl57322, Sgl59512, Sgl59534
Amaranthaceae Chenopodium album 7 gene:ENSEOMG00000000586, gene:ENSEOMG00000002728 ...
gene:ENSEOMG00000005628, gene:ENSEOMG00000021675, gene:ENSEOMG00000021971, gene:ENSEOMG00000024681, gene:ENSEOMG00000025747
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.5AG0007260, CQ.Regalona.r1.5BG0007540 ...
CQ.Regalona.r1.6AG0009990, CQ.Regalona.r1.6BG0011450
Anacardiaceae Pistacia vera 2 pistato.v30135890, pistato.v30285630
Apiaceae Apium graveolens 5 Ag6G00689, Ag6G01819, Ag7G00148, Ag7G01844, Ag8G00106
Arecaceae Cocos nucifera 3 COCNU_02G010650, COCNU_04G000480, COCNU_10G007440
Arecaceae Phoenix dactylifera 3 gene-LOC103704046, gene-LOC103710355, gene-LOC103713501
Asparagaceae Asparagus officinalis 1 AsparagusV1_04.123.V1.1
Asteraceae Flaveria trinervia 4 Ftri13G12329, Ftri14G02563, Ftri16G14214, Ftri9G01255
Brassicaceae Arabidopsis thaliana 2 AT3G09030.1, AT5G41330.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020689m.g.v1.0, Thhalv10027773m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp3g07450.v2.2, Sp7g00610.v2.2, SpUn0010_0090.v2.2
Brassicaceae Brassica nigra 4 BniB01g016370.2N, BniB01g025030.2N, BniB01g055580.2N ...
BniB02g069950.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G0315, Ceq08G1040
Casuarinaceae Casuarina glauca 2 Cgl03G0393, Cgl08G1065
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno04g17000, gene.Cymno14g02710
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g08190, gene.Thate07g13180
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-3706
Nitrariaceae Nitraria sibirica 2 evm.TU.LG01.1051, evm.TU.LG10.1424
Plantaginaceae Plantago ovata 2 Pov_00006487, Pov_00028313
Plumbaginaceae Limonium bicolor 2 Lb2G09285, Lb3G17253
Poaceae Echinochloa crus-galli 4 AH01.4249, AH03.923, BH03.1061, CH03.1214
Poaceae Eleusine coracana subsp. coracana 3 gene-QOZ80_3AG0242140, gene-QOZ80_3BG0285990 ...
gene-QOZ80_7AG0564550
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.4HG0389660.1.CDS1 ...
HORVU.MOREX.r3.7HG0666260.1
Poaceae Lolium multiflorum 2 gene-QYE76_009767, gene-QYE76_069112
Poaceae Oryza coarctata 4 Oco05G008960, Oco06G009330, Oco13G005710, Oco14G006450
Poaceae Oryza sativa 2 LOC_Os03g15800.1, LOC_Os07g23720.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G407600, gene-BS78_02G085600
Poaceae Sporobolus alterniflorus 4 Chr01G030480, Chr12G009110, Chr24G005720, Chr28G005810
Poaceae Thinopyrum elongatum 2 Tel4E01G375700, Tel7E01G343500
Poaceae Triticum dicoccoides 6 gene_TRIDC4AG012280, gene_TRIDC4BG038160 ...
gene_TRIDC7AG023080, gene_TRIDC7AG023140, gene_TRIDC7BG013490, gene_TRIDC7BG013680
Poaceae Triticum aestivum 7 TraesCS4A02G090000.1.cds1, TraesCS4B02G214200.1.cds1 ...
TraesCS4D02G214900.1.cds1, TraesCS7A02G185900.1.cds1, TraesCS7B02G090400.1, TraesCS7D02G186800.1.cds1, TraesCS7D02G187700.1
Poaceae Zea mays 4 Zm00001eb203610_P001, Zm00001eb305940_P001 ...
Zm00001eb371450_P001, Zm00001eb398010_P001
Poaceae Zoysia japonica 2 nbis-gene-3810, nbis-gene-43170
Poaceae Zoysia macrostachya 2 Zma_g3970, Zma_g5041
Portulacaceae Portulaca oleracea 4 evm.TU.LG04.3096, evm.TU.LG13.1466, evm.TU.LG16.473 ...
evm.TU.LG21.1129
Posidoniaceae Posidonia oceanica 5 gene.Posoc01g09500, gene.Posoc02g00170, gene.Posoc03g14950 ...
gene.Posoc06g03730, gene.Posoc06g06340
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_16_RagTag.165, evm.TU.Scaffold_3_RagTag.545
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-1419, nbisL1-mrna-18221, nbisL1-mrna-22404
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-10293, nbisL1-mrna-11629, nbisL1-mrna-21368
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-20332, nbisL1-mrna-6264, nbisL1-mrna-8539
Rhizophoraceae Kandelia candel 3 add.evm.TU.utg000007l.154, add.evm.TU.utg000019l.372 ...
add.evm.TU.utg000022l.220
Rhizophoraceae Kandelia obovata 3 Maker00012821, Maker00014259, Maker00018378
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-18160, nbisL1-mrna-19298, nbisL1-mrna-23214
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-10911, nbisL1-mrna-2032, nbisL1-mrna-6695
Salicaceae Populus euphratica 3 populus_peu03580, populus_peu25506, populus_peu34422
Solanaceae Lycium barbarum 3 gene-LOC132609903, gene-LOC132630718, gene-LOC132634917
Solanaceae Solanum chilense 3 SOLCI002360600, SOLCI002556400, SOLCI003703400
Solanaceae Solanum pennellii 3 gene-LOC107026727, gene-LOC107026814, gene-LOC107031122
Tamaricaceae Reaumuria soongarica 2 STRG.23444_chr05_+, STRG.3192_chr01_-
Tamaricaceae Tamarix chinensis 5 TC01G1661, TC01G4266, TC04G0614, TC05G1903, TC07G0308
Zosteraceae Zostera marina 2 Zosma03g32410.v3.1, Zosma05g27430.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.