Basic Information
Locus ID:
gene.Cymno04g16790
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 25203089 | 25205250 | - | gene.Cymno04g16790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 65,366.12 Da | 28.32 | 91.87 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 587 | 3.07041E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 46 | 205 | 2.47567E-89 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 352 | 1.4E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 43 | 209 | 3.0E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 574 | 6.2E-14 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 229 | 382 | 1.61E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 405 | 599 | 1.48E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 43 | 221 | 4.63E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 396 | 589 | 2.2E-54 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 39 | 215 | 5.4E-59 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 392 | 2.1E-40 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 599 | 1.9E-207 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010922580.1 | pyruvate decarboxylase 2 [Elaeis guineensis] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I5I6 | pyruvate decarboxylase OS=Cocos nucifera OX=13894 GN=COCNU_04G003400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology