Basic Information
Locus ID:
gene.Cymno04g16770
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 25188556 | 25193567 | - | gene.Cymno04g16770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 65,322.70 Da | 30.98 | 88.76 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 46 | 207 | 1.14821E-90 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 405 | 587 | 2.22713E-84 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 43 | 209 | 2.3E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 450 | 574 | 7.1E-13 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 240 | 353 | 2.3E-18 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 43 | 221 | 1.27E-43 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 405 | 599 | 1.5E-39 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 235 | 382 | 2.11E-30 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 229 | 392 | 1.1E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 586 | 3.2E-54 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 216 | 5.2E-61 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 599 | 4.8E-207 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_031486778.1 | pyruvate decarboxylase 2 [Nymphaea colorata] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A218XAH0 | pyruvate decarboxylase OS=Punica granatum OX=22663 GN=LOC116187923 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology