Basic Information
Locus ID:
gene.Cymno04g16550
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 25024609 | 25053263 | - | gene.Cymno04g16550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 131,681.27 Da | 50.01 | 88.67 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15873 | R-SNARE_STXBP5_6 | 1141 | 1180 | 5.11891E-12 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 715 | 9.77E-29 | IPR036322 |
| SUPERFAMILY | SSF58038 | SNARE fusion complex | 1138 | 1178 | 2.62E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 559 | 804 | 2.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 238 | 7.9E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 413 | 3.9E-10 | IPR015943 |
| Gene3D | G3DSA:1.20.5.110 | - | 1130 | 1178 | 2.4E-8 | - |
| SMART | SM00320 | WD40_4 | 600 | 639 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 586 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 282 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 98 | 139 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 355 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 667 | 706 | 33.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 322 | 364 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50892 | v-SNARE coiled-coil homology domain profile. | 1122 | 1186 | 8.514416 | IPR042855 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1102 | - | - |
| Coils | Coil | Coil | 1141 | 1178 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05570.2 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_038980222.1 | uncharacterized protein LOC103709502 isoform X1 [Phoenix dactylifera] | 0 |
| Q9Y2K9 | Syntaxin-binding protein 5-like OS=Homo sapiens OX=9606 GN=STXBP5L PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9Q2H7 | Syntaxin-binding protein 5-like protein OS=Zostera marina OX=29655 GN=ZOSMA_114G00750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10029, jg14773 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17011, gene_2261 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003367, Ah035335 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g023630, BVRB_5g102820 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21447, Sbi_jg22405, Sbi_jg4746, Sbi_jg7326 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12688, Seu_jg16295 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001419, GOSA_00016467 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51704, Sgl57010, Sgl62840, Sgl67457 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018275, gene:ENSEOMG00000018908 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019970, CQ.Regalona.r1.2AG0021700 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177080, pistato.v30267150 |
| Apiaceae | Apium graveolens | 3 | Ag2G02551, Ag6G01838, AgUnG00887 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709502 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1622.V1.1, AsparagusV1_07.487.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G19788, Ftri9G07614 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05570.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012508m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g055070.2N, BniB05g029080.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0115, Ceq08G1005 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0125, Cgl08G1027 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16550 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0933s00001.v1.0, Dusal.1238s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10926, nbisL1-mrna-5849 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1004, evm.TU.LG02.1884 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006521, Pov_00040527 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09212, Lb7G33660 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.4148, CH07.22 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0582800, gene-QOZ80_7BG0613930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0108040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038532 |
| Poaceae | Oryza coarctata | 1 | Oco13G016640 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g49300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G398800 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G011680, Chr28G013730, Chr28G013740 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G183700, Tel3E01G556700, Tel5E01G873800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG009420, gene_TRIDC2BG011490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G085000.1, TraesCS2B02G099700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb062090_P001, Zm00001eb226480_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7128 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2863, evm.TU.LG05.156, evm.TU.LG10.981 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.326, evm.TU.Scaffold_1_RagTag.1827 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14085 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11492, nbisL1-mrna-1378 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14240, nbisL1-mrna-3688 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.158, evm.TU.utg000016l.704 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009995, Maker00017320 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-443, nbisL1-mrna-4947 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13771, nbisL1-mrna-18888 |
| Salicaceae | Populus euphratica | 3 | populus_peu06559, populus_peu20440, populus_peu25459 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608928, gene-LOC132630812 |
| Solanaceae | Solanum chilense | 3 | SOLCI004065500, SOLCI004065600, SOLCI006211300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023463, gene-LOC107031635 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11328, gene_12820 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1790, TC06G0280 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21640.v3.1 |