Basic Information
Locus ID:
gene.Cymno04g13930
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 22672572 | 22672997 | + | gene.Cymno04g13930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 15,835.82 Da | 44.40 | 75.39 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 85 | 128 | 4.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 136 | 1.21E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 134 | 5.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 86 | 127 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 86 | 128 | 12.84335 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_015899891.2 | RING-H2 finger protein ATL2 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0HFY8 | RING-type domain-containing protein OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR08122 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology