Basic Information
Locus ID:
gene.Cymno04g13920
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 22670235 | 22671104 | + | gene.Cymno04g13920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 31,719.33 Da | 78.94 | 63.49 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 114 | 157 | 9.00984E-17 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 162 | 3.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 162 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 218 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_012453206.1 | RING-H2 finger protein ATL2 [Gossypium raimondii] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1Z1N2 | RING-H2 finger protein ATL2 OS=Anthurium amnicola OX=1678845 GN=ATL2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology