Basic Information
Locus ID:
gene.Cymno04g13540
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 22269935 | 22290870 | - | gene.Cymno04g13540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 61,520.10 Da | 58.37 | 74.27 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 365 | 541 | 6.37646E-109 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 75 | 169 | 3.4E-15 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 363 | 470 | 1.8E-16 | IPR000555 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 83 | 173 | 5.49E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 366 | 496 | 1.57E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 64 | 196 | 8.5E-33 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 352 | 541 | 3.9E-71 | - |
| SMART | SM00232 | pad1_6 | 366 | 494 | 2.0E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 367 | 497 | 27.269682 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 199 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_010268042.1 | PREDICTED: AMSH-like ubiquitin thioesterase 3 [Nelumbo nucifera] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9P2H5 | STAM-binding protein OS=Zostera marina OX=29655 GN=ZOSMA_41G00160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology