Basic Information
Locus ID:
gene.Cymno04g13480
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 22222437 | 22232129 | + | gene.Cymno04g13480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 66,728.91 Da | 44.96 | 83.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 385 | 518 | 2.72625E-61 | - |
| CDD | cd17920 | DEXHc_RecQ | 187 | 384 | 1.84178E-93 | - |
| Pfam | PF16124 | RecQ zinc-binding | 521 | 590 | 4.4E-13 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 400 | 508 | 1.4E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 195 | 365 | 2.5E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 233 | 530 | 7.96E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 159 | 384 | 1.3E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 385 | 592 | 2.8E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 427 | 509 | 5.2E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 189 | 393 | 3.4E-24 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 187 | 591 | 4.6E-153 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 201 | 377 | 19.638388 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 399 | 552 | 18.864361 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_039127695.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 1 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZA71 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC103697005 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology