Basic Information
Locus ID:
gene.Cymno04g11190
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 20404909 | 20405778 | - | gene.Cymno04g11190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 30,302.97 Da | 44.28 | 75.19 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 98 | 141 | 1.54671E-19 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 6.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 146 | 1.98E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 147 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 5.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 237 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_010273797.1 | PREDICTED: RING-H2 finger protein ATL3 [Nelumbo nucifera] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8AZR8 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104609244 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology