halophFGD

Basic Information

Locus ID: gene.Cymno04g10700

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: PHD finger protein ALFIN-LIKE

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	20070587	20074680	+	gene.Cymno04g10700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.33	28,664.97 Da	52.68	58.92	-0.66

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15613	PHD_AL_plant	196	246	8.4274E-25	IPR044104
Pfam	PF12165	Alfin	14	141	1.6E-65	IPR021998
Pfam	PF00628	PHD-finger	196	244	1.8E-10	IPR019787
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	189	247	9.97E-17	IPR011011
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	186	244	1.7E-21	IPR013083
SMART	SM00249	PHD_3	196	244	2.0E-9	IPR001965
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	194	246	9.0806	IPR019787
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	197	243	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	162	177	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	150	185	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0042393 (histone binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20510.1	alfin-like 5. AL5 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
RefSeq	XP_008797768.1	PHD finger protein ALFIN-LIKE 3-like isoform X4 [Phoenix dactylifera]
Swiss-Prot	Q5XEM9	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1
TrEMBL	A0A2P5FEI6	Alfin OS=Trema orientale OX=63057 GN=TorRG33x02_081400 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	13	jg1333, jg13601, jg18018, jg25213, jg26460, jg27274, jg28331 ... jg30038, jg31742, jg32176, jg32500, jg3258, jg32888
Aizoaceae	Mesembryanthemum crystallinum	4	gene_11002, gene_15192, gene_24939, gene_6745
Amaranthaceae	Atriplex hortensis	4	Ah003394, Ah012373, Ah015242, Ah028828
Amaranthaceae	Beta vulgaris	3	BVRB_5g102730, BVRB_6g145570, BVRB_7g170200
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg24617, Sbi_jg27080, Sbi_jg33467, Sbi_jg42195 ... Sbi_jg44745, Sbi_jg4732, Sbi_jg7342, Sbi_jg7344, Sbi_jg8478
Amaranthaceae	Salicornia europaea	4	Seu_jg12674, Seu_jg20113, Seu_jg27335, Seu_jg8145
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001411, GOSA_00002178, GOSA_00014708
Amaranthaceae	Suaeda glauca	9	Sgl31760, Sgl37045, Sgl42874, Sgl47646, Sgl47668, Sgl51711 ... Sgl57018, Sgl73497, Sgl77023
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000002492, gene:ENSEOMG00000002903 ... gene:ENSEOMG00000004467, gene:ENSEOMG00000005888, gene:ENSEOMG00000011011, gene:ENSEOMG00000021684, gene:ENSEOMG00000022723, gene:ENSEOMG00000025202, gene:ENSEOMG00000035315, gene:ENSEOMG00000037766, gene:ENSEOMG00000037859, gene:ENSEOMG00000044783
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.5AG0010060, CQ.Regalona.r1.5BG0010570 ... CQ.Regalona.r1.6AG0009790, CQ.Regalona.r1.6BG0011180, CQ.Regalona.r1.7AG0006010, CQ.Regalona.r1.8AG0015170, CQ.Regalona.r1.8BG0016490, CQ.Regalona.r1.9BG0005930
Anacardiaceae	Pistacia vera	5	pistato.v30177030, pistato.v30199230, pistato.v30199270 ... pistato.v30259790, pistato.v30267070
Apiaceae	Apium graveolens	9	Ag10G01286, Ag5G01422, Ag5G01717, Ag7G01655, Ag7G01686 ... Ag8G00091, Ag8G00434, Ag9G00758, Ag9G02585
Arecaceae	Cocos nucifera	8	COCNU_01G021580, COCNU_02G012120, COCNU_03G003630 ... COCNU_04G003080, COCNU_04G014010, COCNU_12G006830, COCNU_16G006650, scaffold009721G000050
Arecaceae	Phoenix dactylifera	12	gene-LOC103701610, gene-LOC103705781, gene-LOC103706091 ... gene-LOC103706682, gene-LOC103706696, gene-LOC103708644, gene-LOC103709560, gene-LOC103712845, gene-LOC103718121, gene-LOC103718347, gene-LOC103720819, gene-LOC120106688
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.257.V1.1, AsparagusV1_02.533.V1.1 ... AsparagusV1_03.1294.V1.1, AsparagusV1_08.3421.V1.1, AsparagusV1_09.419.V1.1
Asteraceae	Flaveria trinervia	8	Ftri11G31676, Ftri1G06238, Ftri4G20951, Ftri4G23699 ... Ftri4G27651, Ftri8G10794, Ftri9G22719, FtriNA15878
Brassicaceae	Arabidopsis thaliana	7	AT1G14510.1, AT2G02470.1, AT3G11200.1, AT3G42790.1 ... AT5G05610.1, AT5G20510.1, AT5G26210.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10004808m.g.v1.0, Thhalv10004815m.g.v1.0 ... Thhalv10008569m.g.v1.0, Thhalv10014469m.g.v1.0, Thhalv10014538m.g.v1.0, Thhalv10021406m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g12870.v2.2, Sp2g13700.v2.2, Sp2g21540.v2.2 ... Sp3g09480.v2.2, Sp6g23950.v2.2, Sp6g37250.v2.2, SpUn0007_0200.v2.2, SpUn0127_0010.v2.2
Brassicaceae	Brassica nigra	16	BniB01g053860.2N, BniB02g009500.2N, BniB02g042330.2N ... BniB02g055060.2N, BniB02g065450.2N, BniB02g078490.2N, BniB03g006040.2N, BniB04g004380.2N, BniB04g014400.2N, BniB05g040820.2N, BniB05g043000.2N, BniB06g039740.2N, BniB07g025210.2N, BniB07g039440.2N, BniB07g057130.2N, BniB08g056450.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G0123, Ceq03G2302, Ceq06G0814, Ceq07G2297, Ceq08G1012
Casuarinaceae	Casuarina glauca	6	Cgl02G0130, Cgl02G0845, Cgl03G2440, Cgl06G0838, Cgl07G2471 ... Cgl08G1034
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno04g10700, gene.Cymno04g16520, gene.Cymno05g02610 ... gene.Cymno05g11810, gene.Cymno05g15410, gene.Cymno08g02680, gene.Cymno11g10400
Dunaliellaceae	Dunaliella salina	3	Dusal.0125s00015.v1.0, Dusal.0971s00002.v1.0 ... Dusal.1278s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g16850, gene.Thate04g21110, gene.Thate09g08840 ... gene.Thate09g19740
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3282, nbisL1-mrna-7451, nbisL1-mrna-953
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1013, evm.TU.LG01.119, evm.TU.LG02.1879 ... evm.TU.LG07.1284, evm.TU.LG07.672, evm.TU.LG08.1071
Plantaginaceae	Plantago ovata	6	Pov_00001855, Pov_00002744, Pov_00004075, Pov_00006520 ... Pov_00010151, Pov_00035946
Plumbaginaceae	Limonium bicolor	8	Lb1G02575, Lb1G05060, Lb2G09227, Lb3G16931, Lb3G18007 ... Lb6G29794, Lb6G29797, Lb8G35760
Poaceae	Echinochloa crus-galli	29	AH01.369, AH02.4121, AH02.573, AH03.3661, AH05.1083 ... AH05.2418, AH05.450, AH07.2254, BH01.356, BH02.4137, BH02.578, BH03.795, BH05.2516, BH05.2815, BH05.507, BH07.3900, BH09.1208, CH01.201, CH02.4172, CH02.654, CH03.4106, CH03.4188, CH03.889, CH05.1279, CH05.2611, CH05.572, CH05.573, CH07.2134, CH09.2698
Poaceae	Eleusine coracana subsp. coracana	21	gene-QOZ80_1AG0010550, gene-QOZ80_1AG0042490 ... gene-QOZ80_1BG0059060, gene-QOZ80_1BG0092320, gene-QOZ80_2AG0134440, gene-QOZ80_2BG0189910, gene-QOZ80_3AG0210680, gene-QOZ80_3BG0255840, gene-QOZ80_4AG0316200, gene-QOZ80_5AG0372870, gene-QOZ80_5AG0375910, gene-QOZ80_5AG0385160, gene-QOZ80_5AG0403720, gene-QOZ80_5BG0420170, gene-QOZ80_5BG0423210, gene-QOZ80_5BG0432150, gene-QOZ80_5BG0452110, gene-QOZ80_7AG0576560, gene-QOZ80_7BG0608010, gene-QOZ80_9AG0679800, gene-QOZ80_9BG0703200
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0025550.1, HORVU.MOREX.r3.1HG0065590.1 ... HORVU.MOREX.r3.2HG0126090.1, HORVU.MOREX.r3.2HG0146580.1, HORVU.MOREX.r3.3HG0306710.1, HORVU.MOREX.r3.4HG0344110.1, HORVU.MOREX.r3.5HG0525560.1
Poaceae	Lolium multiflorum	10	gene-QYE76_002712, gene-QYE76_009838, gene-QYE76_013126 ... gene-QYE76_023039, gene-QYE76_037349, gene-QYE76_039760, gene-QYE76_041755, gene-QYE76_057004, gene-QYE76_060814, gene-QYE76_064094
Poaceae	Oryza coarctata	18	Oco01G026890, Oco02G027940, Oco03G012920, Oco04G013460 ... Oco05G027260, Oco06G028280, Oco07G006770, Oco08G006720, Oco09G003030, Oco09G009860, Oco10G003000, Oco10G009960, Oco13G004180, Oco13G012350, Oco14G004840, Oco14G013100, Oco21G003770, Oco22G004540
Poaceae	Oryza sativa	9	LOC_Os01g66420.1, LOC_Os02g35600.1, LOC_Os03g60390.1 ... LOC_Os04g36730.1, LOC_Os05g07040.1, LOC_Os05g34640.1, LOC_Os07g12910.1, LOC_Os07g41740.1, LOC_Os11g14010.1
Poaceae	Paspalum vaginatum	13	gene-BS78_01G033000, gene-BS78_02G107000 ... gene-BS78_02G346300, gene-BS78_03G057100, gene-BS78_03G362000, gene-BS78_04G166700, gene-BS78_05G116900, gene-BS78_06G109000, gene-BS78_08G062400, gene-BS78_09G063300, gene-BS78_09G117400, gene-BS78_09G120700, gene-BS78_09G147700
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0104214, Pt_Chr0105763, Pt_Chr0204229, Pt_Chr0303902 ... Pt_Chr0306243, Pt_Chr0306303, Pt_Chr0405631, Pt_Chr0501774, Pt_Chr0501785, Pt_Chr0502045, Pt_Chr0505261, Pt_Chr0600150
Poaceae	Sporobolus alterniflorus	32	Chr01G001630, Chr01G020280, Chr02G023100, Chr03G021640 ... Chr04G031410, Chr05G030500, Chr06G009530, Chr07G019240, Chr07G030420, Chr08G000480, Chr08G020510, Chr09G013960, Chr0G018870, Chr0G023730, Chr0G032080, Chr12G017690, Chr12G033340, Chr13G009820, Chr15G011070, Chr17G010290, Chr18G000440, Chr18G007200, Chr18G009570, Chr19G002520, Chr19G013540, Chr22G008110, Chr22G014550, Chr23G012290, Chr26G007260, Chr27G002350, Chr27G014790, Chr31G002690
Poaceae	Thinopyrum elongatum	7	Tel1E01G194900, Tel1E01G432000, Tel2E01G336100 ... Tel2E01G437800, Tel3E01G641500, Tel4E01G139200, Tel5E01G751700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG014840, gene_TRIDC1AG039130 ... gene_TRIDC1BG018940, gene_TRIDC1BG044510, gene_TRIDC2AG021860, gene_TRIDC2BG026210, gene_TRIDC3AG057500, gene_TRIDC3BG064500, gene_TRIDC4AG036140, gene_TRIDC4BG013660, gene_TRIDC5AG067670, gene_TRIDC5BG072960
Poaceae	Triticum aestivum	17	TraesCS1A02G110200.1, TraesCS1A02G262200.1 ... TraesCS1B02G129400.1, TraesCS1B02G272800.3, TraesCS1D02G111700.1, TraesCS1D02G262200.1, TraesCS2A02G172100.2, TraesCS2B02G198500.2, TraesCS2D02G179400.2, TraesCS3A02G403600.1, TraesCS3B02G437100.1, TraesCS3D02G398800.2, TraesCS4A02G227900.1, TraesCS4B02G088200.1, TraesCS4D02G085300.1, TraesCS5B02G486600.1, TraesCS5D02G486400.2
Poaceae	Zea mays	16	Zm00001eb062440_P001, Zm00001eb094990_P002 ... Zm00001eb138270_P001, Zm00001eb145370_P004, Zm00001eb168160_P001, Zm00001eb182490_P001, Zm00001eb211910_P001, Zm00001eb244180_P004, Zm00001eb282300_P001, Zm00001eb288280_P001, Zm00001eb327240_P002, Zm00001eb336130_P001, Zm00001eb349140_P001, Zm00001eb353930_P002, Zm00001eb365950_P003, Zm00001eb411150_P002
Poaceae	Zoysia japonica	12	nbis-gene-11141, nbis-gene-13955, nbis-gene-15487 ... nbis-gene-16590, nbis-gene-18774, nbis-gene-20706, nbis-gene-23496, nbis-gene-23902, nbis-gene-27346, nbis-gene-28528, nbis-gene-408, nbis-gene-48211
Poaceae	Zoysia macrostachya	17	Zma_g11690, Zma_g13719, Zma_g16504, Zma_g17730, Zma_g179 ... Zma_g18591, Zma_g19763, Zma_g24880, Zma_g2492, Zma_g26484, Zma_g27186, Zma_g27753, Zma_g28260, Zma_g6834, Zma_g7634, Zma_g9160, Zma_g9994
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.57, evm.TU.LG04.2870, evm.TU.LG10.512 ... evm.TU.LG16.767, evm.TU.LG17.520, evm.TU.LG18.284, evm.TU.LG19.33, evm.TU.LG24.261, evm.TU.LG26.761
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g05690, gene.Posoc01g25330, gene.Posoc01g36580 ... gene.Posoc05g04930, gene.Posoc08g04810
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.543, evm.TU.Scaffold_10_RagTag.678 ... evm.TU.Scaffold_11_RagTag.323, evm.TU.Scaffold_18_RagTag.709, evm.TU.Scaffold_1_RagTag.719, evm.TU.Scaffold_3_RagTag.330, evm.TU.Scaffold_4_RagTag.1108, evm.TU.Scaffold_4_RagTag.954
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-13813, nbisL1-mrna-14092, nbisL1-mrna-25772 ... nbisL1-mrna-25872, nbisL1-mrna-25904, nbisL1-mrna-27592, nbisL1-mrna-3632, nbisL1-mrna-7385
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-11838, nbisL1-mrna-12794, nbisL1-mrna-16491 ... nbisL1-mrna-16656, nbisL1-mrna-17708, nbisL1-mrna-20195, nbisL1-mrna-3868, nbisL1-mrna-8902
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-1328, nbisL1-mrna-14243, nbisL1-mrna-1453 ... nbisL1-mrna-16936, nbisL1-mrna-4598, nbisL1-mrna-5731, nbisL1-mrna-6047, nbisL1-mrna-8929
Rhizophoraceae	Kandelia candel	9	evm.TU.utg000005l.160, evm.TU.utg000008l.1017 ... evm.TU.utg000008l.612, evm.TU.utg000008l.707, evm.TU.utg000012l.458, evm.TU.utg000019l.1050, evm.TU.utg000023l.27, evm.TU.utg000033l.384, evm.TU.utg000033l.480
Rhizophoraceae	Kandelia obovata	8	Maker00000698, Maker00000824, Maker00009975, Maker00011489 ... Maker00012882, Maker00014689, Maker00015055, Maker00018895
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-14886, nbisL1-mrna-1972, nbisL1-mrna-3910 ... nbisL1-mrna-3998, nbisL1-mrna-441, nbisL1-mrna-6452, nbisL1-mrna-7440, nbisL1-mrna-8344
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-1068, nbisL1-mrna-18891, nbisL1-mrna-2257 ... nbisL1-mrna-22886, nbisL1-mrna-8038, nbisL1-mrna-8157, nbisL1-mrna-835, nbisL1-mrna-9289
Salicaceae	Populus euphratica	9	populus_peu05003, populus_peu06554, populus_peu08193 ... populus_peu11437, populus_peu11872, populus_peu12601, populus_peu20436, populus_peu25470, populus_peu38082
Solanaceae	Lycium barbarum	10	gene-LOC132598571, gene-LOC132604238, gene-LOC132606795 ... gene-LOC132607001, gene-LOC132618195, gene-LOC132621325, gene-LOC132630788, gene-LOC132633498, gene-LOC132640858, gene-LOC132645414
Solanaceae	Solanum chilense	10	SOLCI000319300, SOLCI000534600, SOLCI001248000 ... SOLCI002604300, SOLCI003462700, SOLCI003674500, SOLCI003674700, SOLCI004065300, SOLCI006213100, SOLCI006558500
Solanaceae	Solanum pennellii	11	gene-LOC107002785, gene-LOC107007536, gene-LOC107007817 ... gene-LOC107008303, gene-LOC107012489, gene-LOC107018567, gene-LOC107021020, gene-LOC107023189, gene-LOC107026263, gene-LOC107031326, gene-LOC107032145
Tamaricaceae	Reaumuria soongarica	11	STRG.18147_chr09_+, STRG.20645_chr08_-, STRG.24910_chr08_+ ... STRG.30100_chr10_+, STRG.30647_chr10_-, STRG.5037_chr03_+, STRG.7601_chr05_-, gene_11833, gene_14285, gene_17198, gene_17728
Tamaricaceae	Tamarix chinensis	8	TC04G0766, TC05G0419, TC05G1802, TC05G2810, TC06G0289 ... TC11G0238, TC11G1364, TC12G1141
Zosteraceae	Zostera marina	8	Zosma01g30600.v3.1, Zosma01g36810.v3.1, Zosma02g09570.v3.1 ... Zosma02g19890.v3.1, Zosma03g13870.v3.1, Zosma03g15780.v3.1, Zosma03g25900.v3.1, Zosma04g01840.v3.1