Basic Information
Locus ID:
gene.Cymno04g10550
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PHD finger protein MALE STERILITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 19915024 | 19917462 | - | gene.Cymno04g10550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 75,604.90 Da | 40.58 | 85.82 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 629 | 674 | 4.7896E-24 | - |
| Pfam | PF00628 | PHD-finger | 630 | 676 | 6.3E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 623 | 677 | 3.1E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 618 | 679 | 8.3E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 629 | 675 | 2.4E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 630 | 674 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_038985288.1 | PHD finger protein PERSISTENT TAPETAL CELL 1 [Phoenix dactylifera] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PBA1 | PHD finger protein MALE STERILITY 1 OS=Zostera marina OX=29655 GN=ZOSMA_2G02440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology