Basic Information
Locus ID:
gene.Cymno04g10340
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 19762305 | 19780482 | - | gene.Cymno04g10340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 38,703.39 Da | 48.34 | 106.05 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 302 | 346 | 2.18978E-18 | - |
| Pfam | PF13639 | Ring finger domain | 302 | 344 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 294 | 349 | 1.31E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 353 | 3.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 303 | 343 | 6.7E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 299 | 351 | 0.0047 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 303 | 344 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_038985321.1 | E3 ubiquitin protein ligase RIE1-like [Phoenix dactylifera] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AF26 | E3 ubiquitin protein ligase RIE1-like OS=Phoenix dactylifera OX=42345 GN=LOC103724148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology