Basic Information
Locus ID:
gene.Cymno04g09160
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 18878731 | 18881496 | - | gene.Cymno04g09160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 100,274.18 Da | 48.91 | 78.39 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 565 | 851 | 5.76793E-90 | - |
| CDD | cd00028 | B_lectin | 83 | 196 | 9.19124E-24 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 122 | 208 | 1.8E-18 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 563 | 846 | 2.9E-46 | IPR000719 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 114 | 249 | 2.88E-17 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 540 | 852 | 1.33E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 635 | 857 | 5.9E-58 | - |
| Gene3D | G3DSA:2.90.10.30 | - | 200 | 337 | 3.9E-5 | - |
| Gene3D | G3DSA:2.90.10.30 | - | 85 | 199 | 5.9E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 545 | 634 | 3.0E-28 | - |
| SMART | SM00108 | blect_4 | 81 | 196 | 2.6E-19 | IPR001480 |
| SMART | SM00220 | serkin_6 | 559 | 849 | 4.5E-24 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 40 | 877 | 1.3E-189 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 74 | 194 | 13.898448 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 559 | 860 | 36.597885 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 680 | 692 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 565 | 587 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35370.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_010916822.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 [Elaeis guineensis] | 0 |
| O65238 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana OX=3702 GN=At5g35370 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PXR7 | Receptor-like serine/threonine-protein kinase OS=Zostera marina OX=29655 GN=ZOSMA_155G00230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10429, jg19505, jg39711, jg39712 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000170 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000033178 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30040050, pistato.v30064380 |
| Apiaceae | Apium graveolens | 1 | Ag3G01572 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007860, COCNU_13G004360 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712545, gene-LOC103720305 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1953.V1.1, AsparagusV1_08.2356.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G07834, Ftri5G33074 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35370.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08290.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018390.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2024 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09160 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.939 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00014136, Pov_00021644, Pov_00021646, Pov_00021698 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.1319, AH07.3608, BH03.2250, BH05.1490, BH07.3416 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2AG0147000, gene-QOZ80_2BG0202530 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0419600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_000267, gene-QYE76_000269, gene-QYE76_000426 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G022680, Oco04G023330, Oco14G003090, Oco17G006430 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g52850.1, LOC_Os09g28180.1, LOC_Os12g44320.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G203000, gene-BS78_04G287800 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203072, Pt_Chr0207065, Pt_Chr0601305, Pt_Chr0601332 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G001380, Chr09G019030, Chr0G028390, Chr0G028640 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G004700, Tel5E01G383600, Tel6E01G584600 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG000540, gene_TRIDC5AG037600 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G237700.1.cds1, TraesCS5B02G000800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb033220_P001, Zm00001eb256010_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-19687, nbis-gene-21712, nbis-gene-47398 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14506, Zma_g17224, Zma_g26219, Zma_g32659 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1083 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18759, nbisL1-mrna-9580 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5594 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13077 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.172 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20007 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9857 |
| Salicaceae | Populus euphratica | 2 | populus_peu19720, populus_peu32380 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613436, gene-LOC132627029 |
| Solanaceae | Solanum chilense | 1 | SOLCI003830100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016286, gene-LOC114074957 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15065, gene_15066 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2488 |
| Zosteraceae | Zostera marina | 3 | Zosma01g15000.v3.1, Zosma01g19570.v3.1, Zosma02g18110.v3.1 |